Bombus fervidus (golden northern bumble bee): 139991716
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Entry
139991716 CDS
T12025
Symbol
LOC139991716
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bfer
Bombus fervidus (golden northern bumble bee)
Pathway
bfer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139991716 (LOC139991716)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfer03041
]
139991716 (LOC139991716)
Enzymes [BR:
bfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139991716 (LOC139991716)
Spliceosome [BR:
bfer03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139991716 (LOC139991716)
Complex B
139991716 (LOC139991716)
Complex C
U2 SnRNP specific factors
139991716 (LOC139991716)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
MscL
Motif
Other DBs
NCBI-GeneID:
139991716
NCBI-ProteinID:
XP_071868119
LinkDB
All DBs
Position
10:complement(11556091..11560810)
Genome browser
AA seq
774 aa
AA seq
DB search
MSYHRGGGNKPKGFGFAGFQMTGTKRSGSNVPPPPPNSTLSKQGYHTMNSITENALSACW
GMPKKRSKTEEEYFEDDDDPPPFSLEYIPAPGSPTYDWMKKSTSKEDSDSEEDPLDAFMA
GIDAEVKRNNYEAQLAEDERKEEKSKGFRADIDGEDDEESYYRYMEENPTAGLQQEESDQ
EIDYDEDGNPIAPPKKKDIDPLPPVDHSEIKYESFEKNFYNVHDEIANLSKQQIDDLKKT
LGIKVSGPSPPNPVTSFGHFGFDDALIKAIRKNEYTQPTPIQAQAVPAALSGRDIIGIAK
TGSGKTAAFIWPMLVHIMDQRELKAGDGPIGLILAPTRELSQQIYQEARKFGKVYNIQVC
CCYGGGSKWEQSKALEGGAEIVVATPGRMIDLVKMKATNLTRVTFLVLDEADRMFDMGFE
PQVRSICNHVRPDRQTLLFSATFKKRVEKLARDVLTDPVRIVQGDVGEANADVTQHVIVF
NNNPTGKWTWLLQNLVEFLSSGSLLIFVTKKLNAEELANNLKLKEFDVMLLHGDMDQIER
NKVITAFKKKEVTTLVATDVAARGLDIPHIRTVVNYDVARDIDTHTHRIGRTGRAGEKGT
AYTLVTEKDKEFAGHLVRNLEGANQEVPKSLMDLAMQSAWFRKSRFKGGKGKSLNVGGAG
LGFRGRPETSSTSSCGSSSQGSKDISEVVKKLERHGPGSDRLSAMKAAFRSQYNSQFRAS
SDHTWEQTITRPSVIMPPPPPVPPKPNTEQSKTQDVQSTNIGGERKRVRKSRWE
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgagttatcaccgtggtggtggtaataagccaaaaggctttggatttgctggctttcaa
atgactggcacaaaaagaagtggctctaacgtaccaccacctccaccaaattctactcta
agcaagcaaggctatcacactatgaattctatcaccgaaaatgccttatctgcatgttgg
ggaatgccaaagaaacgcagcaaaactgaggaggagtactttgaggacgatgatgatcct
ccgccattttccttggaatatattccggcacctggatctcccacttatgactggatgaaa
aaatcaacttcgaaagaagatagcgatagcgaggaagatccattagatgcatttatggct
ggaatagacgcagaggttaagagaaacaattacgaagcacaactggcagaggacgagcgc
aaagaagaaaaatccaagggatttagagcggatattgatggcgaggacgacgaggaaagt
tactacaggtatatggaagaaaatccaactgcgggtttgcaacaagaagaatctgatcaa
gaaatcgactacgatgaagacgggaatccgatcgcccctccaaaaaagaaagatatcgat
cccttacctcctgttgatcatagcgagataaaatatgaatctttcgagaaaaatttttat
aacgttcacgatgagatcgctaatttaagtaaacaacaaatcgacgatctgaagaaaact
ttgggaataaaggtatctggtccgtctccgccgaatccggttaccagtttcggtcatttt
ggtttcgatgatgcgttaataaaagctattagaaaaaacgaatacactcaacctacccct
atccaagctcaagcagttccggccgcattgagcggcagggatataataggtatagcgaaa
accggtagcggtaaaacagcagcctttatttggccgatgttagttcacataatggatcaa
agagaattgaaggcaggcgacggacccatcggtttaattcttgctcctacgagagaattg
tcacaacagatttaccaagaagcaaggaagttcgggaaagtgtataatattcaagtgtgc
tgttgttacggcggtggcagcaaatgggagcaaagtaaagcattggaagggggtgcggaa
atagtagtcgcaacgccgggtagaatgatagatttagttaaaatgaaagcaacgaatttg
accagagtaacatttctagtattggacgaagctgatagaatgtttgatatgggtttcgag
ccacaagtacgttcaatatgtaaccacgtaaggccagacaggcaaacattgttgttcagc
gcaactttcaaaaagagggtagaaaagcttgcgagggacgttctgacggatccggttagg
atagtacaaggggacgtcggtgaagcgaatgctgacgtcacgcaacacgtgatagtgttc
aataataatcctaccggcaaatggacttggttgttgcagaatctagttgaattcttgagc
tcaggcagtctgttgattttcgtaactaaaaagctcaatgcggaggaactcgcgaacaat
ctgaaattgaaagaatttgacgttatgctgttgcatggtgatatggatcaaatcgaaagg
aacaaagtaataacggcttttaaaaagaaggaagttactacactggtcgctactgacgtt
gctgctcgaggtttggacattccacatatcagaaccgttgttaattacgacgtcgcacga
gacatagatactcatacacataggataggtagaactggtcgagcgggtgaaaaaggaaca
gcgtatacccttgtaacagagaaagacaaagaattcgcaggtcacctagttcgaaatttg
gagggtgcaaatcaggaagtaccaaagagtctcatggatttagcgatgcaaagcgcttgg
ttccgcaagtcaaggttcaaaggtgggaaagggaagagtttgaacgttggaggggccgga
cttgggtttaggggaagaccggaaacatcttcgacttcgagttgtggttcctcttcgcaa
ggatctaaggacataagcgaagttgttaaaaaattagaaagacatggaccaggtagcgat
cggttatcggccatgaaagctgctttccgtagtcagtacaattctcagttccgggcatcg
tcggatcatacgtgggaacaaactattacacggccttcggtgataatgcccccaccacca
cctgtacctccgaaaccaaatacggaacaatcaaagactcaggatgtacaaagcacgaat
atcggaggagaaaggaagagagtgagaaagagtcggtgggaataa
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