Bombus fervidus (golden northern bumble bee): 139992229
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Entry
139992229 CDS
T12025
Symbol
Tst
Name
(RefSeq) superkiller complex helicase subunit twister
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bfer Bombus fervidus (golden northern bumble bee)
Pathway
bfer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139992229 (Tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfer03019
]
139992229 (Tst)
Enzymes [BR:
bfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139992229 (Tst)
Messenger RNA biogenesis [BR:
bfer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139992229 (Tst)
mRNA degradation factors
3'-5' decay
Ski complex
139992229 (Tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
ATPase_2
Motif
Other DBs
NCBI-GeneID:
139992229
NCBI-ProteinID:
XP_071868981
LinkDB
All DBs
Position
11:5312098..5317373
Genome browser
AA seq
1231 aa
AA seq
DB search
MDIKANNQQLQFDLPPIWLDIKTELREHIECLDNLPIYRLNNTQCYWPRKPDILSLLDCD
LAPLGTTLKFDRDPVTGKLGEMHEVPSKSVGETARNSMSMTRAPGPASDNIRGNTSNIPF
WPGGFDEPEIIMNLSLEEIDFENNLRTLAKGFSAGIEFKSDNCTPKEKTTTATEQKPSEL
EKKNEIERIADKINLMAIIKEEQDEFDFWKSETKETKETKEETKIKTSDIEQAAFDEIAS
FLEEADIPILNISKKPVETAKSKWAEQIDVSVPITDFEKRIPELAMSFPYELDTFQKQAI
LKLEEGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYTSPIKALSNQKYRDLKRKFGS
VGLLTGDLQINPNASCLIITTEILQSMLYCASEVLRDLEFVIFDEVHYINNDERGHVWEE
SVILLPQTVTLVMLSATVPNPLIFADWVGRTKKKKTYVISTLKRPVPLQHYLYTGTDGKT
KNNKFLVLDESGHFLLDGWYKATSTQNPKNQSNKNIKDLKRIPMQRQMTPKQEQVLWNAF
ISHLRTQNMLPVVVFMLSRKRCDMSAVLLRNVDLTTETEKHTIRTFFQNNIRHLKGTDRQ
LPQVLMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTVV
FDSIKKYDGTNFRILYPSEYVQMAGRAGRRGHDTAGMVIVMCRTLMPHFNELKNMMCGQA
QNLESKFKVTYSMVLNLRRLNESVTVEAMMRRSFKESPVVRNQNNYKIQLQKLENELAKL
PPLTDLQKNLSDFYRLAVEYLEYLKYLKSYFYETQKKAIRYLSNGRVLLISYESHYNKLA
ILLSTVQNKGSRQYRVLVLKNSDATNSVKETLKEKSEKAKKSDKWYDIVALTKKKIFVPV
GIPLDEVLTIAAWNILEITSCEIIIDYNLVLENWEKRQVPRFRNEPPSQTMQIAIEELMI
LSLKAYHDITVLQPYLQMRMNYDIDMKLNHLCELEKAMYDINCTEIVNFEEHFEVVYERS
ELESERNKLQLKLSDEGLSLYPEYTNAVALLKDLGYIDNDERVALKGRVALQMGNNELLI
TELILRNVLTVRQPAEIAALLSALIFQQRTDIEPNLTPELKKNCHIIKQIHAELEALEQH
YQLVTLQPLNFGLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAAIT
IGDPVLKEKMEEASTVIKRDIVFTASLYTQN
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggatataaaagctaataatcaacagttacaatttgacttgccacccatttggcttgat
attaaaactgaattaagggagcatatagaatgtttagataatcttccaatataccgtcta
aacaatacacaatgttactggccaaggaaacctgatattttatctcttttggattgtgac
ttagcaccacttggtaccacattaaaatttgatcgtgatcctgttactgggaaacttggg
gaaatgcatgaagtaccttcaaaatcagtaggcgaaactgcacgaaattctatgtctatg
actcgtgcaccaggtccagctagtgataatatcagaggaaatactagtaatattccattt
tggcctggtggttttgatgaacctgagataataatgaatctgtcactggaggaaatagac
tttgaaaacaatttaagaaccttggcaaaaggatttagtgcaggtatagaatttaaaagt
gacaattgtactccaaaagaaaagacgacaactgccacagagcagaaaccatcagaatta
gagaaaaaaaatgaaattgaaagaatagcagataagatcaatttaatggccattataaag
gaagaacaagatgaatttgacttttggaagtcagaaacaaaagaaacaaaagaaacaaaa
gaagaaactaaaataaaaacttcagatatagaacaagcagcatttgatgaaattgcttcg
ttcttagaggaagcagatattcctattttaaatatttcgaaaaaacctgtagaaactgca
aagtcaaaatgggcagagcaaatagatgtgtctgttccaataactgatttcgaaaaacgt
attcctgaactagcgatgagttttccatatgagttagatactttccagaaacaagctatt
cttaagttagaagaaggctgtaatgtatttgtggctgcacacacatcggctgggaaaaca
acagtagcagaatatgctattgcattaagtcagaaacatatgacaaaagttatttataca
tctcccataaaagcgctttcaaaccaaaaatatcgcgatcttaaacgtaagtttggcagt
gtgggattgttaacaggagatttacaaattaatcccaatgcttcgtgtcttattataacc
acggaaattttacaatctatgttatactgtgcatcagaagttttaagggatttagaattt
gttatatttgacgaagtgcactacatcaataacgacgaacgtggtcatgtttgggaagaa
agtgtgattctcttgccacaaacagttactctagtaatgttgtctgcaactgtgcccaat
cctttaatatttgctgattgggttggccgtacaaaaaagaaaaagacatatgtaataagt
acattaaaacgacctgtaccactccaacattatttatacactggtactgatggtaaaact
aaaaacaacaaatttttagtgttggatgaaagtggtcattttctattagatgggtggtac
aaagcaacaagtacgcaaaatccaaaaaatcaaagtaataaaaatattaaagatcttaaa
agaataccaatgcaacgacagatgactccaaaacaggaacaagtattgtggaatgctttt
ataagtcatttaagaactcagaacatgttgcctgttgttgtctttatgttatcacgaaag
agatgcgatatgagcgctgtattattaagaaacgtagaccttacaaccgagactgaaaag
cacactattcgaactttctttcaaaataacattcggcatttaaaaggcaccgatagacaa
ttgccacaagtgcttatgatgcaagaattattagaaagtggaattggtatccatcacagt
ggtatattacctattttgaaagaaatagtggaaatgttatttcaaactggagttgtaaaa
ttactatttgcaacagaaacatttgcaatgggtgtaaatatgccagcacgtactgtggtt
ttcgattctataaaaaaatatgacggtactaattttcgaatactttatccttctgaatat
gtacaaatggctggtcgagctggtcgcagaggtcatgatacagctggaatggttatagtc
atgtgtcgaacattgatgccacattttaacgagttaaaaaatatgatgtgtggtcaagct
cagaacttagaatctaaatttaaagtaacatattccatggttctaaatctgagaaggcta
aatgagtcagtaacagttgaagcaatgatgcgaagatcttttaaagaatcaccagtagtt
agaaaccaaaataattacaagatacaattgcagaaattggaaaatgaactagcaaaattg
ccaccattaacggatctacagaaaaacctatctgacttttatcgactagctgttgagtat
ctagaatatcttaagtatttgaaatcctatttttatgagactcagaaaaaagcaataaga
tatttatcaaatggtagagtattgttgatatcatatgaaagccattataataaattagct
atattactgagcactgttcaaaataaaggtagtaggcaatacagggtattagtccttaaa
aattctgatgcaacaaattctgtcaaggaaacattaaaagaaaaaagcgagaaagctaag
aaatccgataaatggtacgatattgttgctttaacgaaaaaaaaaatatttgtaccagtt
ggaattccactagatgaagtgctaactatagctgcatggaatatattggaaataacaagt
tgtgaaattataatagattacaacttggttttggaaaattgggaaaaaagacaagtacca
agatttagaaatgagcctcccagtcagactatgcaaatagctatagaagaattaatgata
ttatctcttaaagcttatcacgatattactgttctacaaccatatctgcaaatgagaatg
aactatgatatcgatatgaaattaaatcatttatgcgaattagagaaagctatgtatgat
attaattgtacagagatagtaaatttcgaagagcactttgaagttgtatacgaacgaagt
gaattagagagcgaaaggaataaactacaattgaaacttagcgatgaaggattaagcttg
tatccggaatatacaaatgctgttgcacttcttaaggatttgggatatatagataatgac
gaaagagttgcattaaaaggtcgtgttgctttacaaatgggaaataacgaattactaatc
accgaactcattctcagaaatgtgttaactgtacgtcaaccagctgaaatagcagcattg
ttgtctgctttaatattccaacaacgaactgatattgaaccaaatttaacgccagaatta
aagaagaattgccatataataaagcaaatacatgccgaattagaagctttagaacaacat
tatcagttagtaacgttgcaaccactaaactttggtttagtagaggtagtttatgactgg
gcacaagcaaagtcattcgccgagattatggagaaaacggatgtacaagaagggatcata
gtacgatgtatacagcaactaagtgaaacactacgagatgtaaaaaatgcagccattact
ataggtgatcccgttttaaaggaaaaaatggaagaagcctctactgtcattaaaagggat
attgtttttactgcatccttgtatactcaaaattaa
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integrated database retrieval system
