Bombus fervidus (golden northern bumble bee): 139994722
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Entry
139994722 CDS
T12025
Symbol
LOC139994722
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bfer Bombus fervidus (golden northern bumble bee)
Pathway
bfer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139994722 (LOC139994722)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfer03041
]
139994722 (LOC139994722)
Enzymes [BR:
bfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139994722 (LOC139994722)
Spliceosome [BR:
bfer03041
]
Complex C
Other components
Step II factors
139994722 (LOC139994722)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
nSTAND_NTPase5
AAA_30
ResIII
Sigma54_activ_2
T2SSE
AAA_16
ATPase_2
ATPase
cobW
PhoH
NB-ARC
Sigma54_activat
AAA_7
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
139994722
NCBI-ProteinID:
XP_071873732
LinkDB
All DBs
Position
15:1389617..1394481
Genome browser
AA seq
1152 aa
AA seq
DB search
MDTLNESSLYRLEGTEKNQAGGLIIRKKPSDHTFKKPQVSVLGLDKLAKRKRQENAQEVN
SLKSESSSPKSEIKERKYRSYAEETPTHTGGVNTEAQRRLESRLKHQRLSAQDKNHRHNY
KDKDRNRDRDRNRDRYRDWDRERSRSRDSVRDSSRQTPLRFKDEPQTPIFKTKDSTSKSN
WDDDEDEEPRKSSWDHPTPNLYNIKDGRDSVRSEFTPSYKYNPWNKDRKASGATPSIFGE
EKDLWDLWEEEQQRLDREWYALDDGENHAFADVSEEYTRKKEMELEAKRQKRLSAQQRQI
NKDNELWERNRMLTSGVICSLDHDDDPDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPV
VPVRDPTSDMALVARKGSALVRAYREQKERKRAQKKHWELAGTHIGNIMGVRDRHKDDKE
DPGQETDFKAGQKYARHIRDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIV
GETGSGKTTQLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIR
FEDCTSKDTVIKYMTDGILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVAR
RHDLKLIVTSATMDSSKFSAFFGNAATFQIPGRTFPVEVLHSKNPIEDYVDAAVKQVLQI
HLQPRSGDVLVFMPGQEDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRS
EGGLRKCVVATNIAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRA
GRAGRTGPGTCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLSFHFMDP
PPQDNILNSMYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILII
VSMLSVPSIFYRPKGREEDSDSAREKFQVPESDHLTYLNVYNQWKTNGYSSSWCNAHFIH
AKAMRKVREVRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCR
TGMPCHLHPTSALFGMGFTPDYVVYHELVMTGKEYMQCVTAVDGHWLAELGPMFFSVKET
GRSGRAKRRQAMQHLHEMEGQMKEADEEMKARAQEQLEREQASIRKKEILTPGIREPGTP
APYRKTPSRLGL
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggatacattaaatgagtcgagtttgtataggttagaagggactgagaaaaatcaagca
ggaggtttgattattcggaagaaaccctctgatcatacatttaaaaagcctcaggtatct
gtcttgggtcttgacaaacttgcaaaacgaaaaaggcaagaaaatgcacaggaagttaac
tcattgaaatctgaatctagttcaccaaaatcagagattaaggaaagaaaatacagatct
tatgccgaagaaactccaactcatactggtggggtgaatactgaggcacaacgaagatta
gaatcacgattaaagcatcaaagattgagtgcacaggacaaaaatcatagacacaattat
aaggacaaggatcggaatagagatagggataggaatagggatcgatacagggattgggat
agagaaagaagcagaagcagagacagtgttagagatagtagtagacaaacacccttaagg
tttaaagatgaacctcaaactccaatatttaaaacaaaggattcaacatctaaaagtaat
tgggatgatgacgaagatgaagaaccaagaaaatccagttgggatcatccaacacccaac
ctatacaatattaaagatggtagagacagtgttagaagtgaatttacgccttcgtataaa
tataacccttggaataaagatcgaaaagctagtggtgctacacctagcatatttggggaa
gaaaaagacctgtgggacttgtgggaagaagagcaacaaagactggatagagaatggtat
gccttggatgatggagaaaatcatgcgtttgctgacgtttctgaagaatacacccgtaaa
aaggaaatggaattggaagcaaaaagacagaagcgtctttccgcacaacagcgacagata
aataaagataacgaattgtgggaacgtaacagaatgttaacatctggtgtcatatgttct
ttagatcatgatgatgatcctgatgatgaaggagaaaccagagtacatctcttagtccat
aatgttgttccaccatttctggatggtcgaattgtattcactaaacaaccagagcctgtt
gtacctgtacgtgatcctacttctgatatggcacttgtagcaagaaaagggtcggccttg
gtacgagcatatcgtgaacaaaaagagcggaaaagggcgcaaaaaaaacattgggaacta
gctggaactcatattggtaatatcatgggtgtacgtgatagacacaaagatgataaggaa
gatccaggtcaagaaactgacttcaaagctggacaaaaatatgcgcgtcatatacgagat
gaagttaccggagaagctaaatacaggtccattcaacaccagaggaggagtcttccagta
tttgctgtacgacaagaactgttaaatgtaattagagaaaacagtgtagtagttattgtt
ggagaaactggcagtggaaaaacaacacaattgactcaatatcttcatgaagacggttat
agtcggtacggtataattggatgtacacaaccaagaagagtagcagctatgtctgtggca
aaaagagtttctgatgaaatggctactgctttaggagacaaagttggttatgctattcgt
tttgaggattgcacttcaaaagataccgtcattaaatatatgactgatggtattttatta
agagaaagcttaagggaaggagatttggatcgatatagtgtaattatcatggatgaagct
catgaaagatctttatctactgacgtcttatttggtttgttgagagaggttgtagccaga
cgacatgatctgaaattgatcgtaacatccgctacaatggactctagcaaattttcagca
ttttttggaaatgctgcaacattccaaatcccaggtcgcacatttccagttgaagtatta
cactccaagaatccaatagaagactatgttgatgctgcggtgaaacaagtattacaaatt
catttgcaacctcgttcaggcgatgtattggtctttatgcccggtcaggaagacattgaa
gttacttgcgaggctttgaaagaacgtttagcagagatcgaatctgctcctccactttcc
attttacctatttactcgcaactgccctcggatttacaagctaaaatttttcaacgttca
gagggaggtttacgaaaatgcgttgtagcaacaaatatagccgaaacttcattgactgtc
gacggaattgtattcgtcgtggactcgggctattgcaagttgaaagtttataacccacga
attggtatggatgccttacaagtatatccagtgtccagagcaaatgctgatcaaagagca
ggaagagcaggacgtactggtcctggtacctgctacagattatacacgcgaagacaatat
ttagacgaactactattaactggagttccagaaatacagcgaaccaatctggcaaatact
gtattgttactgaagtctttgggtgttcaagatttattgagttttcattttatggatcct
ccaccacaagataatatattaaattctatgtatcagttgtggattttaggtgcattagat
catacaggacgtttaacgcctttgggacgacaaatggcagaattccctttagacccgcca
caatgtcagatgcttattgttgcttctcaactcggttgcactgcagatatacttatcata
gtttctatgctgtcagtgccttcgatattctaccgacccaaaggtcgcgaagaagattct
gattcagctcgagagaagtttcaagtaccagagtctgaccacctaacatatttaaatgtg
tacaatcagtggaagacgaatggttattccagctcttggtgtaacgcacactttattcac
gcgaaagctatgcggaaagtaagagaagttcgacaacagctggaagaaattctgaaacaa
caaaagatggaagttgtaagctgtggcacggactgggacattgtacggaaatgtatttgt
tcggcatactttcaccaagcagctcgtttgaaaggtattggcgaatacgtgaattgtcgt
actggaatgccatgccatcttcatccgacgtcagctttgttcggtatggggttcacgcca
gactacgtggtgtatcacgaacttgtgatgactggcaaggagtacatgcaatgtgtgact
gccgttgatggccactggctagccgaattgggtcctatgttttttagcgtaaaggaaact
ggacgaagcggacgagcaaaaagacgacaagccatgcaacatttacatgaaatggaaggg
cagatgaaagaagcggatgaagaaatgaaagctagggcgcaagaacaacttgaacgtgaa
caagcttctatcaggaagaaggaaatattgacgccaggtatcagagaaccgggtacacct
gctccttatcgtaaaactccaagtcgattggggttataa
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