Bombus fervidus (golden northern bumble bee): 139994979
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Entry
139994979 CDS
T12025
Symbol
LOC139994979
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
bfer Bombus fervidus (golden northern bumble bee)
Pathway
bfer03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfer00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139994979 (LOC139994979)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfer03041
]
139994979 (LOC139994979)
Enzymes [BR:
bfer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139994979 (LOC139994979)
Spliceosome [BR:
bfer03041
]
Complex C
Other components
Step II factors
139994979 (LOC139994979)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
Flavi_DEAD
nSTAND3
nSTAND_NTPase5
AAA_30
AAA_16
SLFN-g3_helicase
ResIII
Sigma54_activ_2
ATPase_2
T2SSE
ATPase
ABC_tran
cobW
PhoH
NB-ARC
Sigma54_activat
AAA_7
AAA_24
AAA_23
SRP54
Motif
Other DBs
NCBI-GeneID:
139994979
NCBI-ProteinID:
XP_071874178
LinkDB
All DBs
Position
15:1321027..1325276
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AA seq
963 aa
AA seq
DB search
MWASRWAAIILSNNLPTSFRRHIGLYADGESKGRPSLFSRINIAVLHAPGYTPSLRHLVN
RLCRRRARVFVDSAQTRPGIPSGPGDLYTRKKEMELEAKRQKRLSAQQRQINKDNELWER
NRMLTSGVICSLDHDDDPDDEGETRVHLLVHNVVPPFLDGRIVFTKQPEPVVPVRDPTSD
MALVARKRSALVRAYREQKERKRAQKKHWELAGTHIGNIMGVRDRHKDDKEDPGQETDFK
AGQKYARHIRDEVTGEAKYRSIQHQRRSLPVFAVRQELLNVIRENSVVVIVGETGSGKTT
QLTQYLHEDGYSRYGIIGCTQPRRVAAMSVAKRVSDEMATALGDKVGYAIRFEDCTSKDT
VIKYMTDGILLRESLREGDLDRYSVIIMDEAHERSLSTDVLFGLLREVVARRHDLKLIVT
SATMDSSKFSAFFGNAATFQIPGRTFPVEVLHSKNPIEDYVDAAVKQVLQIHLQPRSGDV
LVFMPGQEDIEVTCEALKERLAEIESAPPLSILPIYSQLPSDLQAKIFQRSEGGLRKCVV
ATNIAETSLTVDGIVFVVDSGYCKLKVYNPRIGMDALQVYPVSRANADQRAGRAGRTGPG
TCYRLYTRRQYLDELLLTGVPEIQRTNLANTVLLLKSLGVQDLLSFHFMDPPPQDNILNS
MYQLWILGALDHTGRLTPLGRQMAEFPLDPPQCQMLIVASQLGCTADILIIVSMLSVPSI
FYRPKGREEDSDSAREKFQVPESDHLTYLNVYNQWKTNGYSSSWCNAHFIHAKAMRKVRE
VRQQLEEILKQQKMEVVSCGTDWDIVRKCICSAYFHQAARLKGIGEYVNCRTGMPCHLHP
TSALFGMGFTPDYVVYHELVMTGKEYMQCVTAVDGHWLAELGPMFFSVKETGRSGRAKRR
QAMQHLHEMEGQMKEAEEEMKARAQEQLEREQASSRKKEILTPGIREPGTPAPYRKTPSR
LGL
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgtgggcctccagatgggcggcgattattctttcgaataatttgcccacctcgttcaga
aggcatattggcctgtacgcagacggtgagtccaaagggcgtccttccttgttcagcagg
atcaacatcgccgttctccatgccccggggtatactccttccctcaggcatctggtgaac
aggctttgcaggcggcgagccagggtcttcgttgactctgcccagacccggcctgggatt
ccgtccggtcccggtgacttatacacccgtaaaaaggaaatggaattggaagcaaaaaga
cagaagcgtctttccgcacaacagcgacagataaataaagataacgaattgtgggaacgt
aacagaatgttaacatctggtgtcatatgttctttagatcatgatgatgatcctgatgat
gaaggagaaaccagagtacatctcttagtccataatgttgttccaccatttctggatggt
cgaattgtattcactaaacaaccagagcctgttgtacctgtacgtgatcctacttctgat
atggcacttgtagcaagaaaaaggtcggccttggtacgagcatatcgtgaacaaaaagag
cggaaaagggcgcaaaaaaaacattgggaactagctggaactcatattggtaatatcatg
ggtgtacgtgatagacacaaagatgataaggaagatccaggtcaagaaactgacttcaaa
gctggacaaaaatatgcgcgtcatatacgagatgaagttaccggagaagctaaatacagg
tccattcaacaccagaggaggagtcttccagtatttgctgtacgacaagaactgttaaat
gtaattagagaaaacagtgtagtagttattgttggagaaactggcagtggaaaaacaaca
caattgactcaatatcttcatgaagacggttatagtcggtacggtataattggatgtaca
caaccaagaagagtagcagctatgtctgtggcaaaaagagtttctgatgaaatggctact
gctttaggagacaaagttggttatgctattcgttttgaggattgcacttcaaaagatacc
gtcattaaatatatgactgatggtattttattaagagaaagcttaagggaaggagatttg
gatcgatatagtgtaattatcatggatgaagctcatgaaagatctttatctactgacgtc
ttatttggtttgttgagagaggttgtagccagacgacatgatctgaaattgatcgtaaca
tccgctacaatggactctagcaaattttcagcattttttggaaatgctgcaacattccaa
atcccaggtcgcacatttccagttgaagtattacactccaagaatccaatagaagactat
gttgatgctgcggtgaaacaagtattacaaattcatttgcaacctcgttcaggcgatgta
ttggtctttatgcccggtcaggaagacattgaagttacttgcgaggctttgaaagaacgt
ttagcagagatcgaatctgctcctccactttccattttacctatttactcgcaactgccc
tcggatttacaagctaaaatttttcaacgttcagagggaggtttacgaaaatgcgttgta
gcaacaaatatagccgaaacttcattgactgtcgacggaattgtattcgtcgtggactcg
ggctattgcaagttgaaagtttataacccacgaattggtatggatgccttacaagtatat
ccagtgtccagagcaaatgctgatcaaagagcaggaagagcaggacgtactggtcctggt
acctgctacagattatacacgcgaagacaatatttagacgaactactattaactggagtt
ccagaaatacagcgaaccaatctggcaaatactgtattgttactgaagtctttgggtgtt
caagatttattgagttttcattttatggatcctccaccacaagataatatattaaattct
atgtatcagttgtggattttaggtgcattagatcatacaggacgtttaacgcctttggga
cgacaaatggcagaattccctttagacccgccacaatgtcagatgcttattgttgcttct
caactcggttgcactgcagatatacttatcatagtttctatgctgtcagtgccttcgata
ttctaccgacccaaaggtcgcgaagaagattctgattcagctcgagagaagtttcaagta
ccagagtctgaccacctaacatatttaaatgtgtacaatcagtggaagacgaatggttat
tccagctcttggtgtaacgctcactttattcacgcgaaagctatgcggaaagtacgagaa
gttcgacaacagctggaagaaattctgaaacaacaaaagatggaagttgtaagctgtggc
acggactgggacattgtacggaaatgtatttgttcggcatactttcaccaagcagctcgt
ttgaaaggtattggcgaatacgtgaattgtcgtactggaatgccatgccatcttcatccg
acgtcagctttgttcggtatggggttcacgccagactacgtggtgtatcacgaacttgtg
atgactggcaaggagtacatgcaatgtgtgactgccgttgatggccactggctagccgaa
ttgggtcctatgttttttagcgtaaaggaaactggacgaagcggacgagcaaaaagacga
caagccatgcaacatttacatgaaatggaagggcagatgaaagaagcggaagaagaaatg
aaagctagagcgcaagaacaacttgaacgtgaacaagcttctagcaggaagaaggaaata
ttgacgccaggtatcagagaaccgggtacacctgctccttatcgtaaaactccaagtcga
ttggggttataa
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integrated database retrieval system
