Borreliella finlandensis: QIA19_02435
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Entry
QIA19_02435 CDS
T09223
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bff
Borreliella finlandensis
Pathway
bff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QIA19_02435 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bff03021
]
QIA19_02435 (rpoC)
03400 DNA repair and recombination proteins [BR:
bff03400
]
QIA19_02435 (rpoC)
Enzymes [BR:
bff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QIA19_02435 (rpoC)
Transcription machinery [BR:
bff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QIA19_02435 (rpoC)
DNA repair and recombination proteins [BR:
bff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QIA19_02435 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WKC89907
LinkDB
All DBs
Position
complement(396746..400879)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFERIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSVRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYIEARERYGMSFNASMGAEAIKTLLE
NLDLDELSSKLRIQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDIVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNVVGEGKKFLNFSNVILAINNKSLDYNASIYVK
IDGEYKKTTAGRVIFNEALPKGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFRYATKFGCTISMSDIIVPDEKRTYVERANKEIAKIQNDYAKGVITGEERYNNVVSVW
LKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
EKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNAFILNGIEGFNVRVDNGILFTRKGTLKIINVFYEEKIKNIKEI
KVLDSQRVIKGIPLFVDKKGAEILSSYIGYVKLRDDNFFIVSEEQEVSLKAGTKLEIEVG
DYVESGKVIGTFDPFAEPIIAEVKGKIKFKDIILGTTLKEEINTETGNVEKRITDNVFES
LDPRIFIIDSSGMEIASYVLPGDAYLQVEDGQSINIGDVIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENIDSEV
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaagaataaaaattaaaatagcgtctcccgaccaaatt
agaaattggtcttatggagaggttaaaaagtccgagactattaattatagaactttaaga
cccgaaaaagatggacttttttgtgaaaggatttttggtactacaaaggaatgggaatgt
tattgtggtaaatttaaatcggtcagatataaaggtattatttgtgatcgttgtaatgta
gaggttacccattttaaggttagacgtgaaagaatggggcatattgagctagcagcccca
gttgctcatatttggtattacaaatatataccctctaggattgggcttttacttgatatt
acagcatcgagtttgaattctattctttattatgaaaaatatgtagtaattgaaccgggc
gatactgatcttaaaaaaatgcagcttttaaatgaagatgagtacatagaagctagagag
cgatatggcatgtcttttaatgcttcaatgggagctgaggctattaaaactcttcttgaa
aatcttgatcttgatgagctttcatctaagcttagaattcaaatgatagataaagatgat
aaaaccgataagaaactcttaagacgtcttgaaattattgagaattttaaaatttctggc
aataagccagaatggatgattatggaagttcttcctgttattcctccagagattaggcca
atggttcagcttgatggggggcgctttgcaacatctgatcttaatgatctttacagaaga
gttataaacagaaataatcgtttaaggaagttgcttcttcttaatgcgccagagattatt
gtgagaaacgaaaaaagaatgcttcaagaatcagtagactctctttttgacaattctcat
aaaagaaaggttgtcaaaggttcgtctagtaggcctctcaagtcgctttccgatgcatta
aaaggtaagcagggaaggtttaggcaaaatcttcttggtaaaagagtagattattctggt
cgttctgttattgttgttggacctgagcttaagctacatcaatgtggattgcctgcaaaa
atggctcttgagctttttaagccttttgtgataaggagattgattgagagtgaagctgtt
tttaatattaaaagggcaaagaatttaatagagcaagaagtagatgaggtgtggcaaatt
ttagatattgttattaaagagcatcccattcttttaaatagggcgcccactcttcataga
cttggaattcaggcttttgaacctgtgttagttgagggtaaggcaataaaattacatcct
cttgtttgtcatgcatacaatgccgattttgatggtgatcaaatggcggtacatgtgcct
cttactccggcagcacaagccgaaagttgggctttaatgctttcaacaaataatctttta
aatcctgccaatgggcatcctattgtttttccgtcccaagatattgttttgggcctatat
tatttaactatggaaaaaaagaatgttgttggagagggtaaaaagtttttaaactttagc
aatgttattcttgctataaataataagagtctggattacaatgcttctatttatgtaaaa
attgatggcgagtacaaaaaaactacagccggtagggttatatttaatgaggctttgccc
aagggaattgaatttgtaaataaaactcttagtgatttggagctacaaattttaatatca
aaagtttatgtagttcatggttcttctaccgtaattgaaatgcttgacatcatcaaggag
cttggttttaggtatgccactaagtttggatgcacaattagtatgagcgatattattgtt
cctgatgaaaaaagaacttatgtagaaagggctaataaagaaatcgccaagattcaaaat
gattatgccaaaggtgttattactggcgaagagcgttataacaatgtagtttctgtttgg
ttaaagactaatgaagaacttactaataagatgatggaaattttaaagaaagatagagat
ggatttaatgttatatatatgatggcggattctggtgctaggggtagtagaaatcaaata
agacaacttgctggcatgagaggattgatggcaaaaacttctggggatattattgagctt
ccaattatttctaactttaaagaaggtctttctgtgatagagttttttatatctacaaat
ggagcaagaaaaggtctagcagatactgcccttaagaccgccgatgctggatatttaact
cgaagattagtagacattgctcaagatgttgttgttagaatagaagattgtggaactata
aacggaataaaagttgagactgtaaaaaatggtgaagaaatattagaatctttgaaagaa
aaagctgttgggagttattctattgaaagaataaaaaatccaattactggtgagattgtt
ttagatgcaaatgaagaaatctcagaagctaaaatagaattattagaaaaaattggtatt
gaaaaacttgtgattagatctgttttaacgtgtgaagctgagcatggcgtttgtcaaaaa
tgttatggtagagacttttctaagaacaaacctgttaacattggggaggctgtgggaata
attgctgctcagtccataggtcaaccgggtactcaattaaccatgagaacttttcatatt
ggtggagttgctcaggctggcagtgaggatgataaaatatctttaaagaatgctttcata
ctcaatggcatagaaggttttaatgttagagttgataatggaattcttttcacaagaaaa
ggaactttaaaaataatcaatgttttttatgaggaaaaaattaagaacataaaagagatt
aaagttttagattcgcaaagagtaataaaaggaattcctttgtttgttgataaaaagggt
gcagagattctctcttcttacattggttatgttaaattaagagacgataattttttcata
gtgtcagaagagcaagaagtttccttgaaagcgggtacaaagcttgaaatagaggttggt
gattatgttgaatcaggcaaagttattggtacatttgatccatttgcagagcctattatt
gcagaggttaagggtaaaattaaatttaaggatattattttaggaactactcttaaagag
gaaataaatactgaaacaggcaatgttgaaaaaagaattacagataatgtttttgaatct
cttgatcctagaatttttattattgatagtagtggcatggagattgcatcttatgtatta
ccaggtgatgcttatcttcaagttgaagatggccagagtattaacataggagatgttatt
gcgaaactttctaaaggttctgaaaaaacacaagatattacagggggattgccccgtgtt
aatgatctttttgagacaagaattcctaagaatttaactgaaatggctaaagtaagcgga
attgtgcaatttaaatcaattcaaaaaggtaaaaggcttattaatattttagatgagtat
ggggttgaacataagcattatattccagctggaaaacatcttttggttagagatggagat
gttgtaaaagcaggagatatgctttgtgatggtagaattaatcctcatgatgtgcttgaa
attttaggtgggattagtttacaagaatttctgttggcagaaatccaggatgtttatcga
aaacagggtgttagcattaatgacaaacatattggtgtgataatcaagcaaatgatgaaa
aaagttaagattgttgcagttggtgatactaattttgtttatgggcaaaaggtagataag
cacactttttatgagcaaaatagaaaagtaatcgaacaaggcggtgagccagcaatagca
agtccaattcttataggagtaactaaaacgtctcttaatatagattcttttatttccgca
gcttctttccaggaaacaacaaaagtattaacagatgcttctattgctggaaaaattgat
gatcttaggggattaaaagaaaatgttgtaattggacatttaattcctactggaaccggt
atgggtctttataaaaaaattaaagttagtgaaaatatcgattctgaagtttaa
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integrated database retrieval system
