Borreliella finlandensis: QIA19_04120
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Entry
QIA19_04120 CDS
T09223
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bff
Borreliella finlandensis
Pathway
bff02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bff00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QIA19_04120 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bff03021
]
QIA19_04120 (rpoD)
Transcription machinery [BR:
bff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QIA19_04120 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
WKC90208
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Position
747190..749085
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AA seq
631 aa
AA seq
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MSDLEKKYSKLIEGIITHLGDRKSLSFSELSNLLPDDILEPEILDCICSVLEDRGISLVN
KISELDLVVSEDGNDEEEEVEIESDRNFMILDDGFQSDEEDIDIDVKLDDCDEEDISIKD
DLGSGYIKSNVLKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIENILKNE
GLVIENYYNLVNTIYSRMEREEFFKREKDKDKESSPDYYNKKKRIASFYKIPLKPIQDRL
ISYVDNKHRVYDLGGDIFEKNLKKERLALKELLRDIPLYQEELRIFSDDYIDSANKIKDL
QRQQRIILSRLKIEKIRDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKEL
ERIEMYYEYPTDKIISMSEEIAKGKQMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDL
VQEGNIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINRLN
RETRYLIQVLGKDPTDEELSDRLGWELKKVKTVKSVSREPVSLETPIGEEEDSVLSDFIE
DKAIKNPANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTR
ERIRQIESKALRRLKNPKKTQKLKDYLEDLN
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggatttggaaaagaaatattcgaagctgatagagggtattattactcatttggga
gatagaaaatctcttagttttagtgaattatcaaatttacttcccgatgatatattagaa
ccagagattcttgattgtatttgttcggtacttgaggataggggaataagtttggttaat
aaaatttcggaattagatctggttgtcagtgaagatggaaatgatgaagaggaagaggtt
gaaattgaatctgatagaaattttatgattttagatgatggttttcaaagtgatgaggaa
gatattgacattgatgttaagctggatgattgtgatgaagaagatatttctattaaggat
gatttaggttcagggtatattaaaagtaatgttttaaaagatagtcactcagaagatcca
atcaagctttatttaaaggaaataggaaaagagtttttattaacaggaaatcaagaagtt
gaacttgcaaagcaaatggattctggagagagtataattgagaatattcttaagaatgag
ggacttgttatagaaaattattataatcttgtgaatactatttactcaagaatggaaagg
gaagagttttttaaaagagaaaaagataaggataaagagagtagtccggattattataat
aaaaaaaaaagaattgcctctttttacaaaattcctttaaagccaattcaagatcgttta
ataagttatgtagataataagcatagggtgtatgatcttgggggggatatttttgaaaag
aatttaaaaaaggaaagattagccctaaaagagcttttgagagacattcctttgtatcaa
gaggagctaaggattttctcagatgattatattgactctgctaacaaaataaaagattta
caaagacaacaaagaataattctaagcaggctgaaaattgaaaaaataagagatttgagg
gtgcttggaagagatttaactattgctgaaaaaaaaatagagatagaaaaatctctcaag
cttaaagaagatgctattaaagagcagattacagaggcgcagcttgcccaaaaagaactt
gagagaattgagatgtattatgaatatccaactgataaaataataagcatgtcagaagag
attgctaaagggaagcaaatgatgcagcatgctaaagatcagttgattaaggctaattta
aggcttgttgtaagcattgctaaaaaatatgcaaatagaggccttcatttttttgatctt
gttcaagaaggcaatattggattgattaaagctgttgaaaagttcgaatataagagaggt
tttaagttttcaacttatgctacttggtggattagacaagccataacaagatctatttct
gatcaagctcgcacaattagagttcctgtgcacatgattgagcaaataaataggcttaat
agagaaactagatatttaattcaagttttaggcaaagatcccacagatgaagagctttca
gacagacttggatgggaacttaaaaaggttaaaactgtaaagagtgtttcaagagaacct
gtttctcttgaaacaccaattggagaagaggaggattctgttcttagcgattttattgag
gataaggcaataaaaaatcctgcaaatcacacatcttttgtagttttgcaagatcaaata
agagcaattcttggaactcttcctgaaagagaacaagaagttgtaaaaatgagatttgga
cttgaagatggctattctttaactcttgaagaggttggacttcattttaatgttacaaga
gaaagaattaggcaaattgaatctaaagcattaaggcggcttaaaaatcccaaaaaaact
caaaaattaaaagattatcttgaagatttaaattga
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