Bacteroides fragilis 638R: BF638R_0121
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Entry
BF638R_0121 CDS
T01691
Name
(GenBank) putative RNA helicase dead-box protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bfg
Bacteroides fragilis 638R
Pathway
bfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BF638R_0121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfg03019
]
BF638R_0121
03009 Ribosome biogenesis [BR:
bfg03009
]
BF638R_0121
Enzymes [BR:
bfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BF638R_0121
Messenger RNA biogenesis [BR:
bfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BF638R_0121
Ribosome biogenesis [BR:
bfg03009
]
Prokaryotic type
rRNA helicases
BF638R_0121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
RecG_N
CMS1
Ig_Tie2_1
Motif
Other DBs
NCBI-ProteinID:
CBW20730
UniProt:
E1WK09
LinkDB
All DBs
Position
complement(127891..129834)
Genome browser
AA seq
647 aa
AA seq
DB search
MHPKIKIYRDLMKTFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQT
GTGKTAAFGLPLIQKINVKNRIPQSLVLCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGG
SSIDSQIRSLKRGVHIIVATPGRLLDLMERKTVSLATVTNVVMDEADEMLNMGFTDSINA
ILADVPQERNTLLFSATMSPEIARISKNYLHNAKEITIGRKNESTSNVKHVVYTVHAKDK
YAALKRIVDYYPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDTVMQKFR
IRNIQILVATDVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLR
EKGKMREIERIIGKKFIAGEMPTGKQICEKQLLKVIDDLEKVKVNEEDINDFMPEIYRKL
EWLSKEDLIKRMVSHEFNRFVDYYRNREEIEVPTDSRSERAGKSREGKSSRQAEPGYTRL
FINLGKMDNFFPHELITLLNNNTRGRVELGRIDLMKNFSFFEVEEKQAQNVVKALNRTNW
NGRKVTVEVAGEEASTEHKGRGKRNEGNDQGGRGRSSAPSADRKERGKGSKDSKQADSRK
GKKPSREERGYSAARGPKGKDEWKQFFKDAEPDFSEEGWARRKPKKS
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
ttgcacccgaaaataaagatatacagagatttaatgaagacatttgaagagcttggcgtt
tctccggagatacgtaaagctattgaagagatgggatacgagaatcccatgccggtacag
gaggaagtgattccatacctattaggagagaataatgatgtagtagctcttgcacagaca
gggacgggtaagaccgcagcgtttggcttgcccctcatccagaaaattaacgtaaaaaac
agaatacctcaatcactcgttctttgccccacacgcgagctttgcctccagatagcaggc
gacctgaacgactattccaaatacatcgacgggctgaaagtattgcctgtatacggcggt
tcatccatcgacagccagatacgcagcctgaaacggggtgtgcatatcattgttgccaca
ccggggcgactcctcgacttgatggaacgcaaaacggtatctcttgccactgtcacaaac
gtagtgatggacgaagcggacgaaatgctcaatatgggctttacggacagtatcaatgcc
atcctggcagatgttccgcaagaacgtaacacactgcttttctcggccactatgagcccg
gaaatagcccgtatttcgaagaactaccttcacaatgcaaaagagatcaccatcggacgc
aagaacgaaagtacgagcaacgtgaagcatgtggtctataccgtacatgcaaaagataaa
tacgccgctctgaaacgcatcgtagactattatccgcagatttatggtatcatcttctgc
cgtacccgcaaagagacacaggagattgccgataaactgatgcaggaaggttataacgct
gactcgttgcacggagaactctcacaggcacagcgtgacacggtgatgcagaagttccgc
atccgcaacatccagatcctggtagccaccgatgtagctgcgcgcggactggacgtagac
gacctgacacacgtcatcaactacggattgccggacgatacggaaagttatacgcaccgt
agcggacgtacaggacgtgccggaaagacaggtacatccatcgccatcatcaatttgcgt
gaaaaaggaaagatgcgcgaaatagaacgcatcatcggtaagaaattcattgccggtgaa
atgcctaccggtaagcagatctgcgagaaacagcttctcaaagtgatagacgatcttgaa
aaagtaaaggtaaacgaggaggatatcaatgatttcatgcctgagatttaccgtaaactg
gagtggctgagtaaagaagacctcatcaagcgcatggtatcgcatgagttcaaccggttt
gtcgactattatcgcaaccgcgaagaaatagaggtgccgactgatagccgcagtgaacgc
gccggaaaaagccgtgaaggaaaaagcagccgccaggcagaaccgggttacacccgcctt
ttcatcaatctgggtaagatggataacttcttccctcacgaactgatcaccttgctcaac
aataacacacgaggaagagtagaattgggacgcatcgacctgatgaaaaatttctcgttc
ttcgaagtggaagagaaacaagcacaaaacgtcgtaaaggcgctgaaccggacaaactgg
aacggacgtaaagtcacagtagaggtagccggagaagaggcatctacagagcacaaagga
cgtggaaagcggaatgaaggtaacgatcagggtggcagaggaagaagcagcgctccatct
gccgaccgcaaagagagaggcaaaggcagcaaagacagcaaacaagccgacagccggaaa
ggcaaaaagccaagccgtgaggaacggggatattccgcagcccgcggccccaaaggcaaa
gatgaatggaaacagttctttaaagatgccgaacccgacttcagcgaagaaggatgggca
agaagaaagcctaaaaagagctaa
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