Bacteroides fragilis 638R: BF638R_2737
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Entry
BF638R_2737 CDS
T01691
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bfg
Bacteroides fragilis 638R
Brite
KEGG Orthology (KO) [BR:
bfg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfg03016
]
BF638R_2737
Enzymes [BR:
bfg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BF638R_2737
Transfer RNA biogenesis [BR:
bfg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BF638R_2737
Prokaryotic type
tRNA splicing ligases
BF638R_2737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CBW23232
UniProt:
E1WQK9
LinkDB
All DBs
Position
complement(3211368..3212765)
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AA seq
465 aa
AA seq
DB search
MGIRLKDLSKLGYRDNVARSLAVALVGKYCKHETKEQILAALGDILKNPEVYKNSEIWSK
LAEHLSPVFIEKRLTPYDLLDEPLGYKTYGSKYIETLAKQQMNLAMRLPIILAGALMPDA
HAGYGLPIGGVLATDHAVIPYAVGVDIGCRMNLTLFDAGEDFLKRYSHHIKEALKEFTHF
GMDGGLSFAQEHEVLDREEFRMTELLRGLHGKAVRQLGSSGSGNHFVEFGKMSLQAGNVL
GVPEGNYVALLSHSGSRGLGAAIAKHYSLLARDLCRLPREAQHFAWLGLDTEEGQEYWLS
MNLAGDYARACHERIHLNLSKALGLKPLANVNNHHNFAWKEEIAPGQTAIVHRKGATPAQ
KGQPGLIPGSMATPGYLVCGKGISEALCSASHGAGRAMSRQNAKDNFTRSALRKYLSQAG
VTLIGGSVEEMPLAYKDIDRVMKTQEELVEVQGTFMPCIVRMNKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgggaatacgtttaaaagatttaagtaaactgggatatagagataatgtagctcgtagt
ctggctgttgctctcgtaggcaaatattgtaaacacgaaacaaaagagcagatattagcc
gccttgggtgatattctcaagaatcccgaggtatataaaaacagtgagatatggagtaaa
ctggccgaacatctttctcctgtatttatcgaaaaaagattgacgccgtatgatttactt
gatgagcccttgggttataaaacatatggaagcaagtacattgaaacattagccaaacag
cagatgaatctcgccatgcggctgccgattattcttgccggagcattgatgcccgatgca
catgccggttacgggttaccgatagggggagtattggctacagatcatgcggttatcccg
tatgctgtgggggttgatatcggttgtcggatgaatctcaccctgtttgatgccggggag
gattttctgaaacgctattcgcaccatattaaagaagcgctgaaggagtttactcatttt
ggcatggatggcggattgtcttttgcacaagagcatgaggtgcttgacagagaagagttc
cgaatgaccgaattgttgagaggacttcatggcaaggcggtacggcaattaggtagctcc
ggtagtggaaatcattttgtggaatttggtaagatgagcttacaggccggtaatgtcttg
ggcgttccggaaggaaactacgtggctttgctgtcccattccggttcgcgtggtttgggt
gctgccattgccaaacactatagtctgctggcacgcgacctctgccgcctgcctcgcgag
gctcagcactttgcctggctggggttggatacggaagaaggacaggaatactggcttagt
atgaatttagcgggtgattatgctcgtgcctgccatgagcggattcatctgaatttgtca
aaagctttggggctgaaacctttggccaatgtgaacaatcaccacaattttgcatggaaa
gaggaaatcgctcccggacagacagccattgtgcatcgtaaaggagcaacacctgcacag
aaaggccaaccgggactgatccccggaagtatggcaacgcccggttatttggtatgtggt
aaagggataagtgaggccctttgttctgcctcgcatggagcgggacgagctatgtcccgc
caaaatgcaaaagacaactttacccggtcggcattgagaaagtatctttctcaggccgga
gtcacgctgattggtggcagtgtcgaagaaatgccgttggcttacaaggatattgaccgg
gtgatgaagacccaggaggaactggttgaagtccaaggtaccttcatgccctgcatcgta
cgaatgaataaagaatag
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