Bacteroides fragilis 638R: BF638R_4051
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Entry
BF638R_4051 CDS
T01691
Symbol
rpoC
Name
(GenBank) putative DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfg
Bacteroides fragilis 638R
Pathway
bfg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BF638R_4051 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfg03021
]
BF638R_4051 (rpoC)
03400 DNA repair and recombination proteins [BR:
bfg03400
]
BF638R_4051 (rpoC)
Enzymes [BR:
bfg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BF638R_4051 (rpoC)
Transcription machinery [BR:
bfg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BF638R_4051 (rpoC)
DNA repair and recombination proteins [BR:
bfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BF638R_4051 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CBW24494
UniProt:
E1WPE3
LinkDB
All DBs
Position
complement(4764849..4769132)
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKENKIKSNFSKISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
IKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDSIIYYERYVVIQPGVKAEDGIAEFDLLSEEEYLDILDTLPKDNQYLED
TDPNKFIAKMGAEAIYDLLARLDLDALSYELRHRAGNDASQQRKNEALKRLQVVESFRAS
RGRNKPEWMIVRIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELRMHECGIPKLMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVI
WDILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV
HLPLSNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRKGAKGEGLTFY
GPEEALIAYNEGKVDIHAPVKVIVKDLDENGNIVDVMRETSVGRVIVNEIVPPEVGYINT
IISKKSLRDIISAVIKACGVARTADFLDGIKNLGYKMAFQGGLSFNLGDIIIPKEKETLV
QRGYEEVEQVISNYNMGFITNNERYNQVIDIWTHVNSELSNILMKTISSDDQGFNSVYMM
LDSGARGSKEQIRQLSGMRGLMAKPQKAGAEGGQIIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTDLKNNDEVIATLYERI
LGRVSVHDIIHPQTGELLVAGGEEITEDIAKKIQESPIESVEIRSVLTCESKKGVCAKCY
GRNLATNHMVQKGEAVGVIAAQSIGEPGTQLTLRTFHAGGTAANIAANASIVAKNNARLE
FEELRTVDIVDETGEAAKVVVGRLAEVRFIDVNTGIVLSTHNVPYGSTLYVADGEVVEKG
KLIAKWDPFNAVIITEATGKIEFEGVIENVTYKIESDEATGLREIIIIESKDKTKVPSAH
ILTEDGDLIRTYNLPVGGHVVIENGQKVKAGEVIVKIPRAVGKAGDITGGLPRVTELFEA
RNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEVKKYLVPLSKQILVQENDYVRAGT
PLSDGATTPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEIIVRQMMRKVTIDE
PGDTRFLEQQVVDKLEFMEENDRIWGKKVVVDAGDSENLKAGQIVTARKLRDENSMLKRR
DLKPVEVRDAVAATSTQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKIDKLEGM
KENVICGHLIPAGTGLREFDKIIVGSKEEYDRILANKKTVLDYNEVE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagaaaataagatcaagagcaatttctcgaaaatctctatcggtttg
gcttctccggaagaaatccttgagaattcgagtggtgaagtattaaagcctgaaaccatc
aactatcgtacatacaaacctgagcgtgacggtttgttctgcgagcgtatcttcggcccg
atcaaagactacgaatgccattgcggtaaatataaacgcatccgttataaaggtattgtc
tgcgaccgttgtggtgtagaagttactgaaaagaaagtacgtcgcgaacgtatgggacat
atccagcttgtcgtgcctgtagctcacatctggtatttccgttcgctgcctaataagatc
ggttatttgttgggactccccaccaagaaactcgattctatcatttactacgaacgctat
gttgtcattcagccgggtgtgaaagctgaagacggtatcgccgaatttgatctgttgtca
gaagaagaatacttggatattcttgatactcttcctaaagataatcagtatctggaagat
acagaccccaacaagtttattgctaaaatgggagccgaagcgatctatgatctgcttgcc
cgtctcgatcttgatgcattatcctatgagttgcgtcaccgtgccggaaatgatgcttcg
caacagcgtaagaatgaggctttgaagcgtcttcaggtggtagaatcattccgtgcatca
cgtggacggaataaacctgaatggatgattgtacgtattgtaccggtaattccgcccgaa
cttcgtccgttggttccgttggatggagggcgtttcgctacatccgatttgaacgatctt
tatcgtcgtgtgattatccgtaacaatcgtttgaaacgattgattgagattaaggctccc
gaggtgattctccgtaacgagaaacgtatgcttcaggaatctgtcgattcactgtttgat
aattcacgtaaatccagtgcagttaagactgatgccaaccgcccgttgaagtctttgtct
gacagcctgaaaggtaagcaaggacgtttccgtcaaaacttgctgggtaaacgcgttgac
tattcggcccgttcggtaattgttgttggcccggagttgagaatgcatgaatgtggtatt
cctaaactgatggctgccgaactgtacaagccgttcattatccgtaagttgatcgagcga
ggtatcgtaaagactgtgaagtctgctaagaagatcgtggaccgtaaggagccggtgatc
tgggatattcttgaacacgtaatgaaaggtcatccagtattgttgaaccgtgctccgaca
cttcaccgtttgggtattcaggctttccagcctaagatgatcgaaggtaaagctatccaa
ttgcatccgttggcatgtacagcgttcaatgccgactttgatggtgaccagatggctgtt
cacttgcctttgagcaatgaggcagtacttgaagcacaaatgttgatgctggcttctcac
aatattctgaatcctgcaaatggtgctcctattaccgttccttcacaggatatggtgctt
ggtttgtactatatcaccaaactccgtaaaggcgccaaaggtgagggactcacattctat
ggacccgaagaagcgttgatagcttacaatgaaggtaaagtagatattcacgctccggtg
aaggttatcgtaaaagaccttgacgaaaatggaaatatcgttgatgtaatgcgtgagact
tcagtaggtcgtgtaattgtgaacgaaattgttccgcctgaagtcggatacatcaatact
attatttcaaagaaatcattgcgtgacattattagtgctgtaatcaaagcttgtggtgtt
gctcggactgctgacttccttgatggaattaaaaatttaggctacaagatggcctttcag
ggtggtctgtcattcaacttgggtgatatcattatcccgaaagagaaagagacactcgtt
cagagaggttatgaagaggtagagcaggtgatcagtaactataatatgggtttcatcacc
aataatgaacgttacaaccaggtaattgatatctggacacatgtaaactcagaattgtct
aatatcttgatgaagactatttcttcagatgatcagggtttcaactctgtgtacatgatg
cttgattccggtgcccgtggttctaaagagcagatccgtcagctctccggtatgcgtggt
ttgatggcaaaaccgcagaaggcaggtgctgaaggtggtcagatcatcgagaatcctatc
ttgtctaactttaaagagggactttctgtgttggagtactttatctctactcacggtgcc
cgtaaaggtttggcggataccgctttgaagactgccgatgcgggatacttgactcgtcgt
ctggttgacgtttcgcacgatgtgattattaatgaagaagactgcggtacgcttcgcgga
ctggtttgtactgacctcaagaacaatgacgaagttattgctactctgtacgaacgtatc
ctcggacgtgtatccgtacacgatattattcatcctcagaccggtgaattactggttgcc
ggtggtgaagaaattacagaagatatcgccaagaagattcaggaatctccgattgaaagc
gttgagattcgttcggtattgacttgcgaatcgaagaagggtgtttgtgcgaagtgctat
ggtcgtaacctagctacgaaccatatggttcagaaaggtgaggctgtcggtgtaatcgct
gcccagtctatcggtgaaccgggtacacagttgacattgcgtacattccatgctggtggt
acggctgccaacattgcggccaatgcaagtattgttgctaaaaataatgcccgtttggaa
tttgaagaactccgtacggtagatattgtggacgaaactggtgaggctgccaaagtggta
gtaggtcgtttggctgaggttcgtttcattgatgtcaatacaggcattgtactttctacc
cataacgttccttacggttctacactttatgtagccgatggtgaagtggtagaaaaaggt
aaactgattgcgaaatgggatccattcaacgctgttatcataaccgaagctaccggtaag
attgagtttgagggtgtcattgaaaatgttacttataagattgaatcggatgaagcgacc
ggacttcgagaaattattattattgagtctaaagataagactaaagtaccttcggctcac
atcctgaccgaagacggtgatcttatccgtacatataatttacctgtaggtggacacgta
gtgatcgaaaacggccaaaaggtgaaagcaggtgaggtaatcgttaagattccgcgtgct
gtgggtaaggctggtgatattaccggtggtcttccccgtgttactgagttgtttgaagca
cgtaacccgtcgaatcctgccgtcgtatccgaaatcgatggagaggttactatggggaaa
gtgaaacgcggtaatcgcgaaatcatcgttacatctaagaccggtgaagtgaagaaatac
cttgttccgctgtctaagcagattctggtacaggagaatgactacgttcgtgcaggtact
ccattgtccgatggtgctacgactccggctgatattttggctattaaaggtcctacggct
gtacaggaatacatcgtgaatgaagttcaggacgtatatcgtttacagggtgtgaagatc
aatgataagcattttgagatcattgttcgccagatgatgcgtaaagtgactattgacgaa
ccgggcgatacacgcttccttgaacagcaggtagtggacaaactcgagttcatggaagag
aacgaccgcatttggggtaagaaagtggttgtagatgccggagattctgaaaacctgaaa
gccggtcagattgtcacagcccgcaagttgcgtgacgaaaacagtatgctgaaacgccgt
gaccttaaaccggttgaggtgcgtgatgctgttgctgcaacttctacccagattcttcag
ggtattactcgtgccgcattgcaaacttcaagcttcatgtctgccgcttctttccaggag
acaactaaggtactgaatgaggctgctatcaatggtaagatagataagttggaaggtatg
aaggagaatgtaatttgcggtcatttgattccggccggtacaggtcttcgcgagtttgac
aagatcattgtaggttctaaagaagaatacgatcgtattctggctaataagaagacagtg
cttgactataatgaagtagaataa
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integrated database retrieval system
