Butyricimonas faecihominis: F1611_04820
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Entry
F1611_04820 CDS
T09480
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bfh
Butyricimonas faecihominis
Brite
KEGG Orthology (KO) [BR:
bfh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfh03016
]
F1611_04820
Enzymes [BR:
bfh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
F1611_04820
Transfer RNA biogenesis [BR:
bfh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
F1611_04820
Prokaryotic type
tRNA splicing ligases
F1611_04820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6066
Motif
Other DBs
NCBI-ProteinID:
WOF10564
LinkDB
All DBs
Position
complement(1215138..1216448)
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AA seq
436 aa
AA seq
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MIELKGTYNQDCKIFIDEVETEAIELVRNILNQEISAGVQVRIMPDTHVGKGIVIGFTMP
VTRMVNPNYIGVDIGCSVTTFKLNQRIEEEQFPTLDHAIRRSIPMGMHIRKEKNLDDWWI
TPYFETVNNNLHAFQQKWFQRFGETKDSILVDKEYISRLCKKIGIKESTFYCSVGTLGGG
NHFIELGESAKDGSHYLTIHSGSRHFGLKVCNYHAKKMHKTTVLPEEYHEEFKSITRNTL
PTSDIPQKLEELNKRYHVGKREYMLEGEDMYEYLVDMVIAQTYAQFNHKAMAKAIFKDLG
ENYQAVDTVYSMHNFIDTTDWIIRKGAIRAYQGEKMVIPFNMRDGLLICEGKSNPDWNCS
APHGAGRVLARNKALKTLDMEEFTKEMEGIYSTSVCRQTLDESPMAYKDKDLIMLAIQDT
ATIIDTIKPIMNIKAL
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgatagaattaaaaggaacatataatcaagattgcaaaatcttcatcgacgaagtggaa
accgaggccatcgagttggtccggaacattctgaatcaggaaatctctgccggagtacaa
gtacgaatcatgccggatacccacgtgggtaagggaatcgtgattggattcaccatgccc
gtgacacgaatggtcaacccgaactatattggtgtggacatcggttgttccgtcaccacg
ttcaaattaaaccagcgaatcgaagaagaacaattcccgacactggaccatgccatccgg
cgttccattcccatgggaatgcatatccgaaaggagaagaacttggatgactggtggatt
accccctattttgaaaccgtgaataataaccttcatgcctttcaacaaaaatggttccag
cgattcggggaaaccaaagattccattctagtcgataaagaatatatctcccgcttgtgt
aagaaaatcggtatcaaagaaagtaccttctattgttccgtgggtacactaggtggtgga
aatcatttcattgaactaggagaatctgccaaagatggttcacattacctgaccattcac
tccggttctcgtcatttcgggttgaaggtgtgtaattatcatgccaagaaaatgcataaa
acgaccgttcttccggaagagtaccatgaagaattcaagtctatcacgcgtaacactcta
ccgacaagtgatattccccagaaactggaagagttaaacaaacgttaccacgtcggaaaa
agggaatatatgcttgaaggagaagacatgtatgaatatcttgtcgatatggttattgct
caaacttacgcgcaattcaaccacaaggctatggcaaaagccatattcaaagacttgggt
gaaaattatcaagccgtggacacggtttactccatgcataatttcatcgacacgacggac
tggatcatccgaaaaggagccattcgggcttatcaaggtgaaaaaatggttattccattc
aacatgcgtgacggtttgttgatttgtgaaggaaaaagtaacccggactggaactgttcc
gcccctcatggagccggaagggtacttgcccggaacaaagcactgaaaacactggatatg
gaggaattcacaaaagaaatggaaggcatttattccacctccgtctgccgacaaaccctt
gatgaatccccgatggcgtataaagataaagatttgatcatgctagcgatacaagacacg
gcaacgatcatcgacacgatcaaaccaatcatgaacatcaaagctttgtaa
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