Butyricimonas faecihominis: F1611_13875
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Entry
F1611_13875 CDS
T09480
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bfh
Butyricimonas faecihominis
Pathway
bfh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F1611_13875 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfh03400
]
F1611_13875 (mfd)
Enzymes [BR:
bfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F1611_13875 (mfd)
DNA repair and recombination proteins [BR:
bfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F1611_13875 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
GPR128_GAIN_subdom_B
DUF4284
Motif
Other DBs
NCBI-ProteinID:
WOF09390
LinkDB
All DBs
Position
complement(3377112..3380417)
Genome browser
AA seq
1101 aa
AA seq
DB search
MEAKELLDLFQDHPVVQKIANRLRKQTGTKIKLENGIGSLVAFIAAAVGREMKGLQLFVL
NDKEEAAYFYNDLLTFYDEENVRFLPSSFRRSGNFEDKDNDSILVRTEVLNALTAKEVGM
VVTYTEAMAEKVVSKKMLADMSMPVIKGNKLSLTFLESLLGEYGFERNDFVYEPGQFSIR
GSIVDVYSFAEERPVRIDFFGDEVESIRYFDVETQLSEQLIDKVVIVPDLSESTDKNDNV
GLTEFLGKEATWWMKNSLLIHDRINSLKELDAGEFLITSDSLFRTIEGNSVVEWGPELFF
RGEVIRLEAEVQPAVNKQFDLLAEHLLDKQMDRYTVYLCSTNDMQLQRLRDIFSDKGHEV
NFVPVEGTIHEGFSDALIKVCIYTEHQIFDRYQKYRLKTSQIRKGRESITISELQNLHPG
DYVVHIDHGIGRFGGLTKIDNDGKIQEAIRLVYKNNSELYVSLHSLHKISKYKGKDGEPP
TVSKLGGEAWNKLKQRTKSRVKDIARELIALYAKRRREEAYAFSKDSFLQDEMEASFMYE
ETPDQMKAIEAVKADMESPHVMDRLVCGDVGFGKTEVAIRAAFKAVADSKQVAVLVPTTV
LAYQHYNTFKKRLEGMPCRIEYISRMKKSADIKRILKDLEAGKVDIIIGTHRLTSNDIKF
KDLGLLVIDEEQKFGVAVKEKLKRLKLNVDTITMTATPIPRTLQFSLMGARDMSIIRTAP
PNRYPIVTELHRFDEKVIKDAISYEVSRGGQVFFIHNRVDNIRDIQYMIHRLIPGIKSCV
GHGQMSGEELETVMHDFVRGDYDVLIATTIVESGLDIPNANTIIINQAQNYGLSDLHQLR
GRVGRSNRKAFCYLLAPPLELVNADARRRLKAIEDFSGLGSGFNIAMQDLDIRGAGNILG
GEQSGFIAEVGYETYQRILNEALVELRDEEFPELQKVHPDEPMAFATDCVIDTDFALLIP
DTYVENVSERIRLYRELDNIANEEALQRFEIEMKDRFGEIPAPVVGLMEVVRIRQRCIDL
GIERLMVKNNKMVVYFISDQNSPFYASPVFSELLKFIQKQVIPCKISEKNDKLSLVFTSI
ADINRVSEITREMRDFAYGNN
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
ttggaagcaaaagagttattagatttatttcaagatcatcctgtcgttcagaaaattgcc
aatcggctgcgcaagcagacggggacaaagataaagttggagaacgggatcggttcgctc
gtggcttttatcgcggctgccgtgggacgggagatgaagggattacagcttttcgtgttg
aacgacaaggaggaggctgcttatttctacaatgatttgttgactttttatgacgaggag
aacgtgcgttttctgccttcctcgtttcggcgttccggtaattttgaagataaagataac
gattcgattctggttcggacagaggtgttgaatgccttgacggcaaaagaggtggggatg
gtggtcacttacacggaggcgatggccgagaaggtggtgagcaagaagatgttggccgat
atgtcgatgcccgtgatcaaggggaacaagctgtcgctaacgtttttggagtcgttgttg
ggagagtacggtttcgaacggaatgatttcgtgtatgaacccggacagttttctatccgg
ggaagtatcgtggatgtctattctttcgcggaagagcgtccggtgcgaatagactttttc
ggggacgaggtggaaagcattcgttatttcgatgtagagacacagctttccgagcagttg
attgacaaggtggtgatcgtacccgatttgagcgagtcaacggataagaatgataacgtg
gggttgaccgagttccttgggaaagaggccacgtggtggatgaagaattccttgttgatt
catgaccgcattaattcgttaaaagaactggatgccggggaattcctgatcacgtcggat
agtttgttccggacgatcgaggggaacagtgtggtggagtggggaccggagttgtttttc
cggggtgaggtgattcgcttggaggcggaggtgcaaccggccgtgaacaagcagttcgat
ttgctggcagagcatttgctagacaagcagatggatcgctacacggtttatctttgttct
acgaacgatatgcaactccagcgattgcgggatattttctcggacaaggggcatgaggtg
aattttgtacccgtggagggaacgatccacgagggtttcagtgatgccctgatcaaggtg
tgtatctacacggagcatcagatcttcgatcgttaccagaaataccgtttgaagacttcg
cagatccggaaagggcgggagtccatcacgatcagcgagttgcagaacctgcatcccgga
gattacgtggtgcatatagatcacgggatcgggcgcttcggcgggttgacgaagattgat
aatgacgggaagattcaggaggccatacgtttggtgtataagaataattccgaattgtac
gtgagtctccattcattacataaaatttccaagtacaaggggaaggacggtgaaccgcca
accgtgagtaagttgggtggggaggcttggaataaattaaaacagcgaaccaagtcgagg
gtaaaggatattgcccgggagttaatagctctgtatgccaagcgcaggcgggaggaggct
tatgcgttctcgaaagatagtttcttgcaggacgagatggaggcatcctttatgtacgag
gaaacgccggatcagatgaaggcgatcgaggcggtgaaagcggacatggagagtcctcac
gtgatggatcgtctggtttgcggggatgtgggattcggaaaaacggaagtcgctattcgt
gcggcattcaaggcggtggctgatagtaaacaggtggccgtgttggtgccgacgacggtt
ttggcttatcagcattataatactttcaagaaacgtctggaggggatgccttgccggatc
gagtatatcagtcggatgaaaaagagtgccgatattaagcggattttgaaagatttggaa
gcggggaaggtggatattatcatcgggacgcatcgtttgacaagtaatgatataaaattt
aaggatctcggtttgctggtgattgatgaggagcagaagtttggggtggcggtgaaggag
aagttgaaacgtttgaaattgaacgtggataccattaccatgacggcgacaccgatcccg
cggactctgcaattttcgttgatgggggcgagggatatgtcgattatccgtacggccccg
cctaatcgttacccgatcgtgacggagttacatcgttttgatgagaaagtgattaaggat
gcgatttcttacgaggtgagccgtgggggacaggtgttttttattcataaccgggtggat
aatatccgggatattcaatatatgattcatcgtctgattcccggcatcaagagttgtgtg
ggacacgggcagatgagtggggaggagttggagacggtgatgcatgatttcgtgcgggga
gattacgacgtgttgattgccacgacgatcgtggagtcggggttggatattcctaatgcg
aatactattattattaatcaggcccagaattacgggttgagtgatttacaccagttgcgg
ggacgggtgggacgttccaaccggaaggctttttgttatttgctggccccgcctttggaa
ttagtgaatgcggatgcccggaggcggttgaaggcgatcgaggatttcagcggcttgggg
agtgggttcaatattgccatgcaggatttggatattcgtggggccgggaatattttaggg
ggagagcaatccggttttattgcagaagtggggtacgagacctatcaaagaattctgaac
gaggcgttagtggaattgagggatgaggaattccccgaattacagaaggtgcatccggat
gagccgatggcgtttgccacggattgcgtgatcgacacggattttgctttgttgattccc
gatacttacgtggagaacgtgagcgaacgaatccgcttgtaccgggagttggataatatc
gcgaacgaagaggctttgcagcgtttcgagatagagatgaaagaccgctttggcgagatt
ccggctccggttgtcgggttgatggaggtggtccggattcgtcagagatgtatagacttg
ggaatcgagcggttgatggtgaagaataacaagatggttgtttattttatcagtgaccaa
aattcgccattctatgcctctcccgtgtttagcgagctattgaaatttatacagaaacag
gtgatcccttgcaagatcagcgaaaagaatgataagttgagtctggttttcacgagtatt
gccgatattaatcgggtatcggaaattacgcgggagatgcgggactttgcttatggtaat
aattaa
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integrated database retrieval system
