Butyrivibrio fibrisolvens: CIY_05300
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Entry
CIY_05300 CDS
T02581
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfi
Butyrivibrio fibrisolvens
Pathway
bfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIY_05300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfi03021
]
CIY_05300
03400 DNA repair and recombination proteins [BR:
bfi03400
]
CIY_05300
Enzymes [BR:
bfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIY_05300
Transcription machinery [BR:
bfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIY_05300
DNA repair and recombination proteins [BR:
bfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIY_05300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
NuDC
DUF5344
Motif
Other DBs
NCBI-ProteinID:
CBK73458
LinkDB
All DBs
Position
complement(458477..462151)
Genome browser
AA seq
1224 aa
AA seq
DB search
MPENKEATYQPIAFDAIQIGLASPEKIRQWSRGEVKKPETINYRTLKPEKDGLFCEKIFG
PSKDWECHCGKYKKIRYKGVVCDRCGVEITKASVRRERMGHIELAAPVSHIWYFKGIPSR
MGLILDLSPKTLEKVLYFASYIVLDAGETALMYKQVLTEAEYQEAREQYGNGFRVGMGAE
AIQELLRDIDLDEEATKLQIELDNATGQKRSRIIKRLEVVEAFRESGNRPEWMIMTVIPV
IPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLRRLLELGAPDIIVRNEKRMLQEAVD
ALIDNGRRGRPVTGPGNRPLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPELKIY
QCGLPKEMALELFKPFVMKELVGNGMAHNIKYAKKMVEKFEPEVWDILEDVIKEHPVMLN
RAPTLHRLGIQAFEPILVEGRAIKLHPLVCTAFNADFDGDQMAVHLPLTQEAQAECRFML
LSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERGTTVGDETPAVGEGKVFKNLNEAILAY
ENNALTMHARITVRMSKTMADGSVVTGDVSSTLGRLLFNEIIPQDLGYVDRTNPENDLVP
EVDFHVGKKQLKQILEKVINTHGATKTAEVLDDIKAMGYHYSTIAAMTVSISDMTVPPQK
PELISQAEETVDKITRQYKRGLITEEERYREVVDTWKETDDQLTRDLLDGLDKYNNIFMM
ADSGARGSEKQIKQLAGMRGLMADTTGKTIELPIKSNFREGLDVLEYFMSAHGARKGLSD
TALRTADSGYLTRRMVDVAQELIIRESDCVAGTNREIPGMWVYAFMDGREEIESLKDRIT
GRFSCYSIYDAKGEMIVKANHMITPKRAAAIIERGVDDKGEPIKKVKIRNVLNCRSHVGV
CAKCYGANMASGRAVQVGEAIGIIAAQSIGEPGTQLTMRTFHTGGVAGNDITQGLPRVEE
LFEARKPKGLAIITEIAGTVSIEEDSKTKKREVVVTNSSTGDVEKYLIPYGSRIKVLSGQ
ELEAGDELTEGSVNPHDILAIKGKAAVQDYLIREVQRVYRLQGVDINDKHIEVLCRQMLK
RIRIDEAGDTGFMPGSLVDWLDFEEANEQMEAEGKEVATGTQELLGITKAALATNSFLSA
ASFQETTKVLTDAAIKGKVDPLNGLKENVIIGRLIPAGTGMKRYSNIPLSTDNDLANVEI
PEDFEGLAGESEGLVSDDLVEIEE
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgccagagaataaagaagcgacatatcaaccaatagcatttgacgcaatacagattgga
ttggcatcacctgagaagatcagacagtggtctcgtggcgaggttaaaaagcctgagaca
atcaattatcgtacactgaagcctgaaaaggatggtcttttctgcgagaagatttttgga
cctagcaaggactgggaatgtcactgcggaaagtacaagaagattcgttataagggtgta
gtttgtgaccgttgtggtgtagaaattacaaaggcatcagttcgtcgtgaacgtatgggt
cacatcgagcttgctgcaccagtttcacatatttggtatttcaagggtattccttcacgt
atgggacttattcttgatctttcaccaaagacattagagaaggttctctactttgcatca
tacatcgtacttgatgcaggagagacagctcttatgtacaagcaggttcttacagaggct
gagtatcaggaagctagagagcagtatggtaacggcttcagagtaggaatgggtgctgag
gctatccaggagcttcttagagatatcgatctcgatgaagaggctacaaagcttcagatt
gaattagataacgctacaggccagaagcgttcacgtatcattaagagacttgaggttgtt
gaggcattccgcgagtcaggaaacagacctgaatggatgattatgacagttatccctgtt
attccaccagatcttcgtcctatggtacagcttgatggtggccgtttcgctacatctgat
ttgaacgacttatatcgtcgtatcattaatagaaataaccgtctccgtagattattagag
cttggcgctcctgatatcatcgtacgtaacgaaaagcgtatgcttcaggaagctgttgat
gctcttatcgataacggtagacgtggtcgtccagttactggtcctggtaacagacctctt
aagtcactttcagatatgcttaagggtaagtcaggacgattcagacagaaccttcttggt
aagcgtgttgactactcaggacgttcagttatcgtcgttggaccagagcttaagatttac
cagtgtggtcttccaaaggagatggctctcgagctcttcaagcctttcgttatgaaggag
ctcgttggtaacggtatggcccacaacattaaatatgctaagaagatggttgagaagttt
gagccagaggtttgggacatccttgaagatgtcattaaagagcatccagttatgcttaac
cgtgctcctacacttcatagacttggtattcaggctttcgagcctatccttgtagaaggt
agagctatcaagcttcatccacttgtatgtacagctttcaacgccgacttcgacggtgac
cagatggctgttcaccttccacttactcaggaggcccaggctgagtgtagatttatgctt
ctctcacctaacaacttacttaagccttcagacggtggtcctgttgccgttccttcacag
gatatggtacttggtatctactaccttacacaggagcgtggtactacagtaggcgatgag
acaccagcagttggtgaaggtaaggtatttaagaaccttaacgaagcaatacttgcttac
gagaataatgctcttacaatgcatgcacgtattacagttcgtatgtcaaagacaatggct
gacggttctgtagttacaggtgatgtttcatcaacacttggtagacttctcttcaacgag
attattccacaggatcttggttatgtagatcgtacaaatcctgagaatgaccttgttcca
gaagtagacttccacgttggtaagaagcagttaaagcagattcttgaaaaagttattaat
acacacggagctacaaagacagcagaagttcttgatgatatcaaggctatgggttatcac
tactcaacaattgctgccatgacagtttcaatttcagatatgacagttccacctcagaag
ccagagcttatctcacaggctgaagagacagttgataagattacacgtcagtacaagcgt
ggtcttattactgaagaagagcgttatcgtgaagtagttgatacttggaaagagactgat
gatcagcttactagagaccttcttgatggtcttgataagtacaacaacatcttcatgatg
gctgattcaggtgcccgtggttctgaaaagcagatcaagcagcttgctggtatgcgtggt
ttgatggctgatacaacaggtaagactatcgagcttcctattaagtcaaacttccgtgaa
ggtcttgatgtacttgagtacttcatgtcagctcacggtgctcgtaagggtctttcagat
acagcgcttcgtacagccgattcaggatacttgacacgtcgaatggttgacgttgctcag
gagcttattatccgcgagtcagactgtgttgctggaacaaaccgtgagattccaggtatg
tgggtatacgcattcatggatggtcgtgaagagattgagtctctcaaggatcgtatcaca
ggtagattctcttgttactctatctacgatgctaagggcgagatgattgttaaggctaat
cacatgattacacctaagcgtgcagctgcaatcattgagcgcggtgttgatgataagggt
gagccaattaagaaggttaagattagaaacgtacttaactgtcgttcacacgttggtgtt
tgtgctaagtgttatggtgctaacatggcttcaggtcgtgccgttcaggtcggtgaagca
atcggtatcatcgctgcacagtcaatcggtgagccaggtacacagcttactatgagaaca
ttccatactggtggtgttgctggtaacgatattacacagggtcttcctcgtgtcgaggag
cttttcgaggctagaaagcctaagggacttgctatcatcacagagattgctggtacagtt
tctattgaagaggactctaagacaaagaagagagaagttgttgtaacaaactcttctaca
ggcgatgttgagaaatatctcatcccttacggatcacgtatcaaggttctttcaggacag
gagcttgaggctggtgatgagcttacagaaggttctgtaaacccacacgatatccttgct
atcaagggtaaggcagccgttcaggattacctcatccgtgaagttcagcgtgtttaccgt
ttacagggtgttgatatcaacgataagcatatcgaagtactttgccgtcagatgcttaag
agaatcagaatcgacgaagcaggtgatacaggatttatgccaggttcacttgttgattgg
cttgattttgaggaagcaaacgagcagatggaagcagaaggcaaggaagttgctacaggt
acacaggagcttcttggtatcacaaaggcagcacttgctacaaactcattcctttcagca
gcttcattccaggagacaacaaaggttcttactgatgcagctatcaagggtaaggttgac
ccacttaacggtcttaaagagaacgttattatcggtcgcttaatccctgctggtacaggt
atgaagagatactcaaatatccctctttcaacagacaatgatttagcaaacgttgaaatt
cctgaggatttcgaaggtttagctggagagtctgagggattggtttcagatgatttagta
gaaatcgaagagtaa
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integrated database retrieval system
