Bacteroides finegoldii: BFINE_10330
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Entry
BFINE_10330 CDS
T09648
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bfin
Bacteroides finegoldii
Pathway
bfin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFINE_10330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfin03019
]
BFINE_10330
03009 Ribosome biogenesis [BR:
bfin03009
]
BFINE_10330
Enzymes [BR:
bfin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFINE_10330
Messenger RNA biogenesis [BR:
bfin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFINE_10330
Ribosome biogenesis [BR:
bfin03009
]
Prokaryotic type
rRNA helicases
BFINE_10330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDW75238
LinkDB
All DBs
Position
896320..898185
Genome browser
AA seq
621 aa
AA seq
DB search
MKTFEELGVSPEIRRAIEEMGYENPMPVQEKVIPYLLGENNDVVALAQTGTGKTAAFGLP
LLQQIDVKNRIPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLK
RGVHIIVATPGRLLDLMERKTVSLSTIRNVVMDEADEMLNMGFTESINAILADVPKERNT
LLFSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVHAKDKYEALKRIVDYY
PQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVATD
VAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKMREIERI
IGKKFIPGEMPTAAGICQKQLLKVIDELEKVKVNEEEIAEFMPDIYRKLEWLSKEDLIKR
MVSHEFNRFAEYYRNRAEIEIPTNSRGERAGRGDRKEGGFEKRSRKAAPGFNRLFINLGK
TDSFFPSDLIGLLNSNTRGRIELGRIDLMQNFSFFEVPEKETINVVKALSRSKWNGRKVV
VEVSNEEGGKERAPRRENKDRKSKEVSVKGSKAGKKEKPSRAERGYANARGPKKKDDWQA
FFKDKEPDFSEEGWARRKPKK
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatttgaagagcttggcgtttctccggaaatacgtagagcaattgaagaaatg
ggatacgagaatcccatgccggtacaagagaaagtgattccgtaccttttaggagaaaat
aatgatgtagtagctcttgcacagacaggaacaggtaaaacagccgcattcggtttgccc
ttgctccaacagattgacgtaaaaaacagaattccacaatcgcttatcctctgccctacc
cgcgagctttgtctccagatagcaggagatctgaacgactattccaaatacattgacgga
ctgaaagtgctgcctgtatatggtggttcttccatcgacagtcagatacgcagcttgaaa
aggggagtacatatcattgtcgccactcccggacgtttgctggatttgatggaacgcaaa
accgtatctctatcgaccatccgcaatgttgtgatggacgaagcggacgagatgctgaac
atgggatttacggaaagtatcaacgctattcttgccgatgttccaaaggagcgtaacaca
ttgcttttctcggcaacgatgagcccggaaatcgcacgtatttcaaagaattacctgcag
aacgcaaaggaaatcacgattggccgtaaaaacgaaagcaccagtaacgtaaagcacgtt
gcctatacggtgcacgccaaagataaatacgaagcgctgaaacgcatcgttgactattat
ccgcagatctacggtatcatcttctgccgcacacgtaaggaaactcaagagattgcagac
aaactgatgcaggagggttataacgccgattcactgcacggtgaactttcgcaggcgcaa
cgcgatgctgtaatgcagaaattccgtatccgcaacttgcaactgcttgtcgctacggac
gtagctgcccgtggtctggacgtggacgacctgactcatgtcatcaattacggattgccg
gatgacacggaaagttatacccaccgtagcggtcgtacgggacgtgccggaaagactggt
acttctatcgctatcatcaaccttcgcgagaaaggaaagatgcgcgagatagagcgcatt
atcggcaaaaaattcattccgggcgaaatgccgacggcagccggaatctgtcagaagcag
ttgctgaaagtgattgacgaacttgaaaaggtgaaagtcaatgaggaagagattgccgag
ttcatgccggacatttaccgcaaactggaatggttaagcaaggaagacttgattaaacgc
atggtgtcgcatgagttcaaccgtttcgctgaatattaccgtaaccgtgccgaaatagag
atcccgaccaacagtcgcggagaacgtgccggacggggtgatcgcaaagaaggtggtttc
gagaaaagaagcaggaaagccgctccgggcttcaaccgtctgttcatcaacttgggtaag
acggacagtttcttccctagcgatcttatcggtctgctcaacagcaatacacgcggacgt
attgagcttggacgtatcgacctgatgcagaacttctctttcttcgaagttccggaaaag
gagacgatcaatgtagtaaaagctttaagtcgcagtaaatggaacggacgcaaagtggta
gtggaagtatccaacgaagaaggaggtaaagaacgtgccccacgccgcgagaataaggat
agaaagtccaaagaggtctcggtaaaaggttccaaagcgggcaagaaagagaaaccaagc
cgtgccgaacgaggatacgcaaacgcacgtggtcctaaaaagaaggatgattggcaagca
ttcttcaaagataaagagcctgacttcagcgaagaaggatgggcacgcagaaaaccgaag
aaatag
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