Bacteroides finegoldii: BFINE_13000
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Entry
BFINE_13000 CDS
T09648
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bfin
Bacteroides finegoldii
Pathway
bfin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFINE_13000 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfin03019
]
BFINE_13000 (rnr)
03016 Transfer RNA biogenesis [BR:
bfin03016
]
BFINE_13000 (rnr)
Enzymes [BR:
bfin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BFINE_13000 (rnr)
Messenger RNA biogenesis [BR:
bfin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BFINE_13000 (rnr)
Transfer RNA biogenesis [BR:
bfin03016
]
Prokaryotic type
tRNA degradation factors
BFINE_13000 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
S1CSD-TOTE-2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BDW75505
LinkDB
All DBs
Position
complement(1124391..1126547)
Genome browser
AA seq
718 aa
AA seq
DB search
MAKKKEKKEKKAGKRMSKKELAALLIDFFHAKSNEVLSMKYIFSELRLTTHPQKMLCIDI
LHDLLDDDYISEIEKGKFRLNNHGTEMIGTFQRKSNGKNSFIPEEGGEPVFIAERNSAHA
MNNDKVKITFYAKRKNREAEGEVIEILERANDTFVGTLEVAKSYAFLVTENRTLANDIFI
PKDKLKGGKTGDKAIVKITEWPDKAKNPIGQVIDILGKAGDNTTEMHAILAEFGLPYVYP
KAVETAADKIPAEITPEEIAKREDFRKVTTFTIDPKDAKDFDDALSIRSIKNGLWEVGVH
IADVTHYVKEGGIIDKEAEKRATSVYLVDRTIPMLPERLCNFICSLRPNEEKLAFSVIFD
ITEKGEIKDSRIAHTVINSDRRFTYEEAQQIIETKEGDYKEEVLMLDTIAKALREKRFAA
GAINFDRYEVKFEIDEKGKPISVYFKESKDANKLVEEFMLLANKTVAEKIGRVPKNKKPK
VLPYRIHDLPDPEKLENLSQFIARFGYKVRTSGTKTDISKSINHLLDDIHGKKEENLIET
VSIRAMQKARYSTHNIGHYGLAFDYYTHFTSPIRRFPDMMVHRLVTKYMDGGRSVSEAKY
EDLCDHSSNMEQIAANAERASIKYKQVEFMSERLGQIYDGVISGVTEWGLYVELNENKCE
GLVPVRDLDDDYYEFDEKNYCLRGRRKNRTYSLGDAITVRVARANLEKKQLDFELIEK
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaagaaagaaaagaaagagaaaaaggccggtaagagaatgagtaaaaaagag
ctggcagcgttgttaatagactttttccacgccaaatccaatgaagttctaagtatgaaa
tacattttctcggaattgcgtcttaccacccatccgcagaaaatgctatgcatcgatata
ttacatgaccttttggatgacgattatatctccgaaattgagaagggcaagttccgtctg
aataatcacggcacagaaatgataggtaccttccaacgcaaaagcaatggaaagaattcc
tttattcccgaagaaggaggtgaaccggtattcatagcagagcgcaattccgcccatgcc
atgaacaatgacaaggtaaaaattacattttatgccaaacgaaagaacagggaggcagaa
ggggaagtaatcgaaatactggaacgtgccaacgacacttttgtcggtacattggaagta
gccaagtcatacgcatttctggtaacggaaaaccgtacacttgccaatgacatatttatt
ccgaaagataaactgaaaggcggaaaaaccggagataaagcgatcgtgaaaataacagag
tggcctgacaaggcaaagaatcccatcggacaagtgatagacatattgggcaaagcaggt
gacaataccactgagatgcacgccattctcgcagaattcggcttaccatacgtatacccg
aaagcagtagagacagcagccgataagattccggcagaaatcactcccgaagagatagcc
aagcgtgaagacttccgcaaggtgacaactttcactatcgacccgaaagatgctaaggac
ttcgacgatgcgctttccatccgctccatcaaaaacggattgtgggaagtaggcgtacac
atcgccgatgtgacacactatgtaaaagaaggaggaatcatcgacaaagaagctgaaaag
cgtgccacttccgtttatctggtagaccgcaccatcccaatgctccccgaacggttgtgc
aacttcatctgttcactccgtccgaacgaagagaaactcgctttctccgtgattttcgat
attaccgagaaaggagaaatcaaagactcacgcattgcgcatacagtcatcaattccgac
cgccgtttcacttacgaagaggctcagcagattattgaaactaaagaaggtgactacaaa
gaagaagtacttatgctggacaccatcgcgaaagcactccgcgaaaaacggttcgcagcg
ggagcaatcaattttgaccgctacgaggtgaaattcgaaattgacgagaaagggaaacct
atcagtgtgtatttcaaagagtcgaaagacgccaataaactggtagaagaatttatgctt
cttgccaacaaaaccgtagcagagaagataggacgtgtacccaaaaacaaaaagcctaaa
gtactgccctaccgtatccacgatctgccggatccggagaaactggagaatctgtcacaa
ttcatcgctcgcttcggctacaaggtacgtacaagcggaacaaaaacagatatttcaaaa
tccattaaccatttgttggatgatatacatggaaagaaggaagagaatctgattgagacc
gtgtctatccgtgctatgcaaaaagcccgttattctacacataacatcggtcactacggg
ctggcattcgattattatactcatttcacctcacccatccgccgtttcccggacatgatg
gttcaccgtctagtaacgaagtatatggatggagggcgcagtgtatccgaggccaaatac
gaggatctttgtgatcacagctcaaatatggaacaaattgcagccaacgccgaacgtgct
tccatcaaatacaaacaagtggaattcatgagcgaacgtctgggacagatttacgatggt
gtcatctccggagtaaccgagtggggactgtatgtcgaacttaacgagaataaatgcgaa
ggtctcgtccctgtccgtgacttggatgacgattattatgagtttgacgaaaagaactac
tgccttcgtggacgccgcaagaacagaacatatagtttaggagatgccattaccgttcgt
gtagcacgtgccaatctggaaaagaaacagctcgacttcgaattaattgagaaataa
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