Bacteroides finegoldii: BFINE_53990
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Entry
BFINE_53990 CDS
T09648
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfin
Bacteroides finegoldii
Pathway
bfin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFINE_53990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfin03019
]
BFINE_53990
03400 DNA repair and recombination proteins [BR:
bfin03400
]
BFINE_53990
Enzymes [BR:
bfin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BFINE_53990
Messenger RNA biogenesis [BR:
bfin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFINE_53990
DNA repair and recombination proteins [BR:
bfin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BFINE_53990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
RQC
zf-CXXC
Cas3-like_C_2
TetR_C_25
SERTA
Motif
Other DBs
NCBI-ProteinID:
BDW79604
LinkDB
All DBs
Position
4599241..4600542
Genome browser
AA seq
433 aa
AA seq
DB search
MRDTLKTYFGYDSFRPLQEEIIRHILDKQDALVLMPTGGGKSICYQLPALLSEGTAIVVS
PLISLMKDQVEALQANGIAAGALNSSNDETENANLRRSCVAGKLKLLYISPEKLLAEKDY
LLRDMNISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQVPIIALTATADKITREDII
RQLHLIRPRTFISSFDRPNISLTVKRGFQTKEKNKAIIEFIQRHGKESGIIYCMSRNKTE
TVAQTLLKQGIRCGVYHAGLSAQQRDETQNDFINDRIQVVCATIAFGMGIDKSNVRWVIH
YNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDLILLTKFASESSQQKINLEKLQRMQQ
YAEADICRRRILLSYFGETATEDCGNCDVCKNPPQRFDGTVIVQKALSAIARAEQQIGTG
LLIDILREAIRQR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgagagatactctaaaaacatatttcggatacgacagtttccgtccgctacaagaagaa
atcatccggcatattctagataaacaggatgcactggttctaatgcccacaggtggagga
aaatccatctgttatcaattgcccgctttgctcagcgaaggtactgctatcgtggtttct
ccgcttatctcactcatgaaagatcaggtggaagcgttacaggcaaacggcattgccgcc
ggagctctgaatagcagtaatgacgaaacggaaaatgccaatttacggcgttcctgcgtt
gcggggaagctgaaactgctttatatttctcctgaaaagttgttggcggaaaaagactac
ctgctacgggatatgaacatttctctatttgccatagacgaagctcattgtatctctcaa
tggggacacgattttcgtccggagtatacacagatgggagtcctccatcaacaattccca
caagtgcccatcatcgctttaactgccactgcggataaaatcacccgcgaagatatcatc
cgtcagctacatcttatccgaccgcgtacgtttatttcttctttcgaccgccccaacatc
agcctgacagtcaaacggggatttcagacgaaagaaaaaaataaagccatcatagaattc
atccaacgccatggaaaagaaagcggaattatctactgcatgagccgcaacaagacagaa
actgtagcccaaacgctgctaaagcaaggtatccgttgtggggtctatcatgccggttta
tccgcacagcaacgtgacgagacacaaaatgatttcatcaacgaccgcattcaggtagtg
tgtgccaccatcgctttcggtatgggaatcgacaaatcgaatgtacgctgggtgattcac
tataatctgcccaaaagtatagaaagcttttatcaggaaatcggacgtgccggacgggat
ggcctgcccagcgatactgtattgttttattcattaggcgacctgatactactgaccaaa
tttgcatcggaaagtagccaacaaaagatcaatctcgagaaacttcaacgaatgcaacaa
tatgcggaagctgacatctgccggagacgcatcttattgagctatttcggagagacagcc
acagaggactgcggaaattgtgatgtctgcaagaatcccccccagcgttttgatgggaca
gtcattgtacaaaaagcactaagcgccattgcacgtgcggaacaacagatcgggacaggg
cttctgatcgacattctgcgggaagctattcggcagaggtga
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