Bacteroides finegoldii: BFINE_54500
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Entry
BFINE_54500 CDS
T09648
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bfin
Bacteroides finegoldii
Pathway
bfin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BFINE_54500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfin03019
]
BFINE_54500
Enzymes [BR:
bfin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BFINE_54500
Messenger RNA biogenesis [BR:
bfin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BFINE_54500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
SNF2-rel_dom
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
BDW79655
LinkDB
All DBs
Position
complement(4645187..4646311)
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AA seq
374 aa
AA seq
DB search
MTFRDLNIIEPILKAIEEKGYIAPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPII
QHLQANKETDKRQGIKALILTPTRELAMQISECIDDYSKYTRVRHGVIFGGVNQRPQVDM
LRKGIDILVATPGRLLDLINQGHIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEK
QTLFFSATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISILQ
KAEDRSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMVA
TDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVNDIQ
KLTGKKLNKADFAI
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgacatttagagatttaaatataatcgaaccgattttaaaagcaattgaagaaaaagga
tatattgctccaacatctattcaggaaaaagcaattcctgccgcattggcgaaaagagat
atattaggttgtgcacaaacaggaacaggaaagaccgcttcgtttgcaattcctattatt
cagcatttgcaggcaaataaagagacagataaacgtcagggtatcaaagcactgatatta
acgcctacccgtgagcttgctatgcaaatcagtgagtgcattgatgattattcaaaatat
acccgtgtgcgtcacggagttatttttggtggtgtgaatcaacgtccgcaggttgatatg
ttgcgcaaaggaattgatattttagtggcaactccgggccgcttgcttgatttgataaat
caagggcatatccatctgactaatatagaatattttgtgcttgatgaggcagatcgtatg
ctcgatatgggttttatacatgatatcaagcgaatattgccgaaacttccgaaagaaaag
caaacgctgtttttttcagcaacaatgccggatagtattattgctttgacaaagtcgtta
ttgaaaaatccggtgaagatttatataacaccgaagtcatcaacagtagattcaatcaag
caaattatttattttgtggagaagaaggaaaaaagccagctattaatttcgattctgcaa
aaggcggaagaccggtcagtgctcatcttttcacgaacaaagcataatgctgataaaatt
gttagaatattaggtaaggcagggattggaagtcaggctattcacggaaacaaaagccaa
gcagcgagacagtctgcattggggaactttaaatcggggaagacgaaagtaatggtggct
accgatattgcttccagaggaattgatattaatgaattgccgttggttattaattatgat
cttcctgatgttcccgaaacttatgtacatcgtattggtcgtacgggaagagctggaaat
gaaggtacagcacttacgttttgctcgcaggaagaacggaaattggttaatgacattcaa
aaattgacaggaaagaaactgaataaagctgattttgctatttga
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