Bifidobacterium adolescentis JCM 19861: B19861_14020
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Entry
B19861_14020 CDS
T09745
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bfj
Bifidobacterium adolescentis JCM 19861
Brite
KEGG Orthology (KO) [BR:
bfj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfj03019
]
B19861_14020 (hrpA)
Enzymes [BR:
bfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B19861_14020 (hrpA)
Messenger RNA biogenesis [BR:
bfj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B19861_14020 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
SLFN-g3_helicase
T2SSE
HA2_C
AAA_30
NACHT
nSTAND3
AAA_11
Zeta_toxin
ResIII
Cas3-like_C_2
AAA_16
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
BEK83460
LinkDB
All DBs
Position
1540395..1544504
Genome browser
AA seq
1369 aa
AA seq
DB search
MKFEYPSELPVSAARSDIAEAVRSSQVVIVSGQTGSGKTTQLPKILLELGRGSHGRQIVH
TQPRRLAARTVAERIASEMGVTLGEEVGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LMQYDTIIIDEAHERSLNIDFLLGYLTALLPKRRDLKLVITSATIDSVKFQEHFEHALHT
KVPVIEVSGRTYPVQIVYEPLGTAPALMRSVPGFETGAMPGDADYEALSAAPDGRDGRDS
RDTNVDMPTAVARACAELVIHSTHDRGPRDILVFASGERDIHDFENALRRHYGPRAADMR
RPDAIEIVPLFARLSSKEQHKVFEPHTHQRIVIATNVAETSLTVPGIRYVVDPGTARISR
YSKTAKVQRLPIEPISQASANQRSGRCGRIADGIAIRLYSREDFETRPEFTEPEILRTSL
GAVVLHMLSVGVARTAKDVTDFGFIDPPDMKAVSDGFNELTELKAVARKHGEVVLTHTGR
LLARIPIDVRLGRMVIEAAKSTTPNTLAAVLVVVAFLSLQDPRERPDENREEADRIHNRY
ADPTSDFLTALNLWDRVFQADGEPSNSALRRICKTEYLSWLRMRQWKDLVAQLREMCQEF
KFKLGEPIPVSRPPLEIRQLPLNQQAAHSLCCSWDAQGIHTSMLSGLLSMMGMQVTREPK
ASDFAGLKGAARARAMKRAQKMAKNDYQGARGTHFALFPASAVAKSTPQWVMSTELVETS
RLWARYSAQIDPAWAEPLAGALTRTTYADPHWSGSRGSAVASAKVLLYGLPIVQDRTVQW
GRINPLEARDFLIRQGLVEGDIQQRFSYDDFVTRNRDILEDAADDASRTRQVAQTVGDED
LFDFYNAIIPNTVTSVADLAKWWKTKHDEQPDLLDFDPDKVERLAGSDSVSLDDYPDHWH
TLGTDGSPIDLRLSYIYDPHDPNDGVTVHVPLKALSRLTPEQFSWNVPGLLDELIVGMIK
SLPKTLRVQFVPAPDTARKIRAWIDKRYPDLPGSGSQQKPDIAPENEDGMAAWPDLPHVF
TQAAISIVGAQIHPEVLTGELWNKLAPYLRMTFAVEQQLPPNRKNQHGRRHARGPVKTLG
TGKSLVELQRRFAEQAKASARHMVEKQARNAGDQGKFVEQANLLNKAGATTEARATMLWQ
GALDTLRLPGERISSRWLGTEALMLASAPYKSTKELTEDLQLAAVKRLLPNIDQLPDDEA
LADAVLDVREVYEDTVYAVAHDVIAILKRYAEVDKAVSGKADLPLLSVLQSIREHIATLV
YPGFIGKTPPEALPSIERYLHADLLRLTKAKNDKNRDVRWAWEANEAKQLADKAVAKAQR
EPAGPRHETLMKQAETVRWMLEEFYVSLWAQELGTPKPISLQRIKKAIA
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatatccttccgaactgccggtttccgcggctcgcagcgacatcgccgaa
gccgtcaggtcaagccaggtggtgatcgtttccggccagacgggctccggcaaaaccacg
cagctgccgaagattctgctggaactgggccgtggatcgcacggcaggcagatcgtgcac
acgcagccgcgcaggcttgccgcacgtaccgtcgccgaacgaatcgccagcgaaatgggc
gtgacgttgggtgaggaagtcggctatcaggtgcggttcacggacgaaagctcgccgaag
acgcgcctgcgcgtggtgacggacggtattctgctggcacagatccaacgcgatccgaag
ctcatgcagtacgacacgatcatcatcgacgaggcgcatgagcgcagtctgaacatcgat
ttcctgctcggctatctgacggcgctgctgcccaagcggcgcgacctgaagctcgtcatc
acgtccgcgacaatcgattcggtgaagttccaggagcatttcgaacacgcgctgcacacg
aaggtgccggtcatcgaagtgtcgggacgcacgtatccggtgcagatcgtgtatgagccg
ttgggcaccgcgccggcgctgatgcgttccgtgccgggtttcgaaacgggcgcgatgccc
ggcgacgcggattacgaggcgctgtcggccgcgccggatggcagggacggccgcgattcg
cgcgacacgaacgtggacatgcccaccgcggtggcgcgcgcctgcgccgaattggtgatc
cattccacgcacgaccgtggtccgcgcgacattctcgtgttcgcttccggcgagcgcgac
atccacgatttcgagaacgcgctgcgccgccattacggtccgcgcgcggcggatatgcgc
aggccggatgcgatcgagatcgtgccgttgttcgcacggttgtcttcgaaggaacagcat
aaggtgttcgaaccgcatacgcatcagcgtattgtgatcgccacgaatgtcgccgaaacg
tcgctgacggtgccgggcatccgatatgtggtcgatccgggcacggcgcgtatctcccgc
tattcgaagacggcgaaggtgcagcgtctgcctatcgagccgatcagccaggcgagcgcg
aaccagcgttcgggccgttgcggccgtatcgccgacggcattgcgatccgcttgtattcg
cgtgaggatttcgagacgcgtcccgaattcacggagccggagattctgcgcacgtccctg
ggcgcggtcgtgctgcacatgctgtcggtgggtgtggcgcgtacggcgaaggatgtgacg
gatttcggtttcatcgatccgccggatatgaaggccgtgtcggatggtttcaacgagctg
accgagctgaaggccgtggcgcgcaaacatggcgaggtggtgttgacgcataccggccgt
ctgctggcacgtattccgatcgacgtgcgtttgggccgtatggtcatcgaagccgcgaag
tcgaccacgccgaacactctggcggcggtgctggtagtagtcgcgttcctgagcctgcag
gatccgcgcgaacgtcccgacgagaaccgtgaggaggcggatcggatccacaaccggtat
gcggacccgaccagtgatttcctgaccgcgttgaacctgtgggaccgcgtgttccaagcg
gatggcgagccgagcaattccgcgctgcgccgcatctgcaagaccgagtacttgagttgg
ctgcgcatgcgccaatggaaggatttggtcgcccagctgcgcgaaatgtgccaggagttc
aaattcaagcttggcgagccgattcccgtgtcccgtccaccgttggagatccgccagctg
ccgcttaaccagcaggcagcgcattcgctgtgctgctcatgggacgcgcagggcatccac
acgtccatgctttccggcctgctgtccatgatgggcatgcaggtcacgcgcgagccgaag
gcatccgatttcgctggtttgaagggtgcggcacgcgctcgtgcgatgaaacgcgcgcag
aagatggcgaagaacgactatcagggcgcgcgcggcacgcatttcgccctgttccccgcc
tccgccgtagccaaatcgacaccgcaatgggtgatgagcaccgaactggtggagacaagc
cggctgtgggcgcggtattccgcgcagattgatcccgcatgggcggagccgctcgccgga
gcactcacccgtaccacgtacgcggatccgcactggtccggttcgcgcggctcggccgtg
gcgagcgcgaaggtgctcctgtacggcctgccgatcgtgcaggaccgcaccgtgcagtgg
gggcgcatcaatccgcttgaggcgcgcgatttcctcatccggcagggtctggtggagggc
gacatccagcaacggttctcctatgatgatttcgtcaccaggaaccgggacatcctcgag
gatgcagccgatgatgcgagccgcacccgacaggtggcgcagaccgtcggtgacgaggat
ctgttcgacttctacaacgccatcatccccaacaccgtcaccagcgtggccgatttggcg
aaatggtggaagacgaagcacgacgagcagcccgatctgctggatttcgatccggacaag
gtggagcgtctcgccggctccgattcggtgtccctggacgactatcccgaccattggcat
acgctcggcaccgacggctcccccatcgatctaaggttgagctacatctacgacccgcac
gacccaaacgacggcgtcaccgtgcatgtgccgttgaaagcattgtctcgactgactccg
gaacagttctcgtggaatgtgccgggattgttggacgagctgatcgtcggcatgatcaag
tcgctgccgaaaacgttgcgcgtgcagttcgtgcccgctccggacacggcacgcaaaatc
cgcgcctggatcgacaaacgctatcccgacctgccgggctccggcagccagcaaaagcct
gacatcgcccccgaaaacgaggatggcatggccgcatggcccgacctgccgcacgtgttc
acgcaggcggccatcagtatcgtcggcgcgcaaatccacccggaagtcctcaccggcgaa
ctatggaacaagctcgcgccatacctgcgcatgaccttcgccgtggaacagcagctgccg
cccaaccgcaagaaccagcacggccgacgacacgcgcgaggacccgtcaaaacgctcggc
accggcaaatcactcgtcgaactgcaacgcagattcgccgaacaagccaaagcctccgca
cgccacatggtcgaaaaacaagcccgaaacgcaggagaccaaggcaagttcgtcgaacaa
gccaacctgctcaacaaagcgggagcgaccaccgaagcacgcgccaccatgctctggcaa
ggcgcgctcgacacgctgcgcctgcccggtgaacgcatctcctcacgctggctcggcacg
gaagcgctcatgctcgcctctgccccctacaagtccacgaaggagctcaccgaagacctg
cagctggcagccgtcaaacggctcctgcccaacatcgaccagctgcccgacgacgaagcg
ctcgccgacgcagtgctcgatgtgcgcgaagtgtacgaggacaccgtgtacgcggtggcg
catgacgtgatcgccatactgaaacggtatgcggaagtcgacaaagccgtgtccggcaaa
gcggacctgccactgctgagcgtgctgcagtcgatccgcgaacacatcgccacactcgta
taccccggtttcatcggcaagacgccgccagaggcattgccgtccatcgaacgatacctg
cacgccgacctgctgcgcctcaccaaggcgaaaaacgacaagaaccgcgacgtgcgatgg
gcttgggaagccaacgaagccaaacaacttgccgacaaggccgtggcgaaagcacaacgt
gaaccagccggcccacgccacgaaacgctgatgaagcaggcggaaaccgtacgttggatg
ctggaggaattctacgtgtccctgtgggcacaggaactcggcacgccgaaaccgatcagc
ctgcaacgcatcaaaaaggcgatcgcctag
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