Bifidobacterium adolescentis JCM 19861: B19861_15620
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Entry
B19861_15620 CDS
T09745
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bfj
Bifidobacterium adolescentis JCM 19861
Pathway
bfj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bfj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B19861_15620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfj03021
]
B19861_15620
03400 DNA repair and recombination proteins [BR:
bfj03400
]
B19861_15620
Enzymes [BR:
bfj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B19861_15620
Transcription machinery [BR:
bfj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B19861_15620
DNA repair and recombination proteins [BR:
bfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B19861_15620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PEARLI-4
Focal_AT
Motif
Other DBs
NCBI-ProteinID:
BEK83620
LinkDB
All DBs
Position
complement(1761293..1765306)
Genome browser
AA seq
1337 aa
AA seq
DB search
MLDVNEFDKLRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEEQRHQDLPDLQQEFDNEIANLEKRRNAEIEERAKKVEAD
LAELEAEGEAKGSARAKLRNSAEREMAAIRTRYDEQIQRLSAVFDRFKTLKPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLEAASKQLREEIDTGTGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDQGFAQNMKSAKRLVDRA
DSEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLTTVIDGAKGQG
RVFSSLEEAEMALDKHEIDMQAKVLIRLPQDFVLPKDWEPGEVKVVDPEPGSPDVVKEER
FHDGSVLFATSYGRILFNGTLPVDYPFVNEQAPKKRLSKIVDDIATRYSTAQVAVTLDAL
KDLGFTRAPWSGVSFAFSDVIQPPELDEYIEKYEGEADKVNENYEIGMLTEEERRQELVD
LWTKCTSEVSEAVEEHFDSKNNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRKGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKRG
LTMKVGERDAEGNLHLVKAADGGPYSRLLAADVIDPADGETVLYKAGDALSMDVLNDLVA
HGVEEVKARSVLTCESKRGVCAKCYGWSLATNKLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIAEFAGVVKVEDTERGRQVTLKPDDDS
VEPIVYPVTRRAPMLVKDGDHVEAGTQLIEGSVDPKKILRILGPRAAQVNIVEEVHTVYR
SQGVDIHDKHIEVIVHQMLRRITVIDSGDTDLLPGELVDKARFKAANMEAVKNGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEAALNQKVDDLKGLKENVIIGKLIPAGTG
LARYRNATVEPDKAIRDTIYPNFGLGGEGTDSSFGDTDLSDVDFSNIDFGDLKLGDDFNP
DDFLDDNGGQTDLGDTL
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgaatttgacaaactgaggatcggactggccaccgccgacgacatc
cgtaactggagctacggcgaggtcaagaagccggagaccatcaactaccgtaccctgaag
ccggagaaagacggcctgttcggcgagcagatcttcggacctacccgcgactgggaatgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgaacgctgcggcgtg
gaagtcaccaagagccgtgtgcgtcgtgagcgcatgggccacatcgagctcgccgctccg
gtgacccacatctggttcttcaagggtgtgccgtcccgactgggctacctgctggacatc
gcgccgaaggacctcgagaaggtcatctacttcgcggcctacatggtcaccaaggtggac
gaagagcagcgtcatcaggacctgccggacctgcagcaggagttcgacaacgagatcgcc
aacctcgagaagcgccgcaacgccgaaatcgaggagcgcgccaagaaggtcgaagccgat
ttggccgagctcgaagccgaaggcgaagccaagggctccgcacgtgccaagctgcgcaac
agcgccgagcgtgaaatggccgccatccgtacccgctacgacgagcagatccagcgtctg
agcgccgtgttcgaccgcttcaagaccctgaagccgggagacatggaaggcgacgtcgac
ctgtggcgtgagatggaagaccgctacggcgattacttcgaaggctgcatgggcgccgaa
gccatcaagaagcgtctgcaggacttcgacctcgaggcagcctccaagcagctgcgcgaa
gagatcgacacgggcaccggccagcgcaaggcccgcgccctgaagcgtctgaaggtcgtc
aacgcgttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggacctgcgcccgatggtgcagctcgacggtggccgtttcgccacctccgac
ctcaacgacctctaccgtcgtgtgatcaaccgtaacaaccgtctgaagcgcctcatcgag
ctcggcgccccggagatcatgctcaacaacgagaagcgcatgctccaggaagccgtcgac
tccctgttcgacaacggccgtcgtggccgtccggtcaccggcgcttcgaaccgtccgctc
aagtccctgagcgacatgctcaagggcaagcagggccgtttccgtcaaaacctgctcggt
aagcgtgtggattactctggccgttccgtgatcgtggtcggcccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
ctcgtggaccagggcttcgcgcagaacatgaagagcgccaagcgcctcgtggaccgtgcg
gactccgaagtgtggggcgtgctcgaagaggtcatctccgagcatccggtgctcctgaac
cgtgcacctacgctgcaccgtctgggcatccaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccgccgcttgcctgcgccgcattcaacgccgacttcgatggcgat
cagatggcagtccacctgccgctgtccgccgaagcccaggctgaggcccgttccctgatg
atggcttccgacaacatcctgaagccggcagacggccacaccgtgaccatgccgagccag
gacatgatcctcggtctgtactacctgaccaccgtcatcgacggcgccaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggcgctcgacaagcacgagatcgacatg
caggccaaggtgctcatccgccttccgcaggacttcgtgctgccgaaggactgggagccg
ggcgaggtcaaggtcgtcgatccggaaccgggcagcccggacgtggtcaaggaggagcgt
ttccatgacggctccgtcctgttcgccacctcctacggccgtatcctgttcaacggcacc
ttgccggtcgactacccgttcgtcaacgagcaggcgccgaagaagcgtctgagcaagatc
gtcgacgacatcgcgacccgttactccaccgctcaggtggccgtgacgctggacgccctg
aaggatctgggcttcacccgcgcaccgtggtccggcgtgtccttcgcgttctccgacgtt
atccagccgccggaactggacgagtacatcgaaaagtacgaaggcgaagccgacaaggtt
aacgagaactacgaaatcggtatgctcaccgaagaggagcgtcgtcaggaactggtcgac
ctgtggaccaagtgcaccagcgaggtctccgaggcggttgaggaacacttcgattccaag
aacaacctggccatcatcgtgcagtccggtgcacgaggaaacatgatgcagatcaaccag
atcgcaggtatgcgaggcttggtggcaaacccgaagggcgagatcattcctcgaccggtc
aagtccaactaccgtaagggcctgtccgtgctggaatacttcatctcccagcacggcgcg
cgtaagggtctggccgataccgcactgcgtaccgcagagtctggctacctgacccgtcgt
ctggtggacgtctcccaggacgtgatcgtgcgtgaggaggactgcggcaccaagcgcggc
ctgaccatgaaggtcggcgaacgcgatgccgaaggcaacctgcacctggtcaaggccgcc
gacggtggcccgtactcccgtctgctcgcggccgacgtcatcgacccggccgacggcgag
accgtgctgtacaaggccggcgacgccctgtccatggacgtgctcaacgatctcgttgcc
cacggcgtggaagaggtcaaggcccgttccgtgctgacctgcgaatccaagcgtggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtggacgtcggcgaggcc
gtcggcatcgtggcggcacagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggcggcgtcgcttccgcttccgatatcacccagggtcttccgcgtgtcacc
gagcttttcgaagcccgtaccccgaagggcgaggctccgatcgcggagttcgccggcgtg
gtcaaggtggaagacaccgagcgcggccgtcaggtcaccctgaagccggacgacgactcc
gtcgagccgatcgtctacccggtgacccgtcgtgcgccgatgctggtcaaggacggcgac
catgtcgaagccggcacccagctcatcgaaggctccgtcgacccgaagaagatcctgcgc
atcctcggcccgcgcgccgcacaggtgaacatcgtggaggaagtgcacaccgtgtaccgc
tcccagggcgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctgcgt
cgcatcaccgtgatcgactccggcgacaccgacctgctgccgggcgaactcgtggacaag
gcacgcttcaaggccgccaacatggaagccgtgaagaacggtggcaagccggccgccggc
cgtccggagctgatgggcatcaccaaggcttcgctggccaccgattcctggctgtccgcg
gcctccttccaggagaccacccgcgtgctcaccgaagccgccctgaaccagaaggtcgat
gacctgaagggcctcaaggagaacgtcatcatcggtaagctcatcccggcaggtaccggc
ctcgcccgttaccgcaatgccacggtggagcccgacaaggccatccgcgacaccatctac
ccgaacttcggtttgggcggcgaaggcaccgacagctccttcggcgacaccgacctgtcc
gatgtggacttctccaacatcgacttcggcgacctgaagctgggcgatgacttcaacccg
gatgacttcctggacgacaacggcggccagaccgatctgggcgacaccctgtga
DBGET
integrated database retrieval system
