Bifidobacterium fermentum: QN062_02455
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Entry
QN062_02455 CDS
T10739
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bfk Bifidobacterium fermentum
Pathway
bfk03420
Nucleotide excision repair
bfk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QN062_02455
03430 Mismatch repair
QN062_02455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfk03400
]
QN062_02455
Enzymes [BR:
bfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QN062_02455
DNA repair and recombination proteins [BR:
bfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QN062_02455
MMR (mismatch excision repair)
Other MMR factors
QN062_02455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
XDS51068
UniProt:
A0AB39UGN4
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All DBs
Position
complement(610494..613136)
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AA seq
880 aa
AA seq
DB search
MFSDPDVIQRRAEELIGDLNPQQAQAVQYSGGALLIGAGAGSGKTRVLTRRIAWILSQVG
AWPSQILAITFTNKAAAEMRERLQRLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGF
SIYDSADSERLVKMIETEFNIDVKRYTPRAVLSRISDYKNNLQGWQTQLKEYAPDFHPGE
RAHSIGRFGNVEELYSVLYAEYEHRLAMANAVDFDDLIVRTVELLRNDPMVADYYRHKFR
YILVDEYQDTNHAQYVLIRELAGIDGDETTASTAIGAGKTGPAWVTVVGDSDQSIYAFRG
ADISNIRDFEKDFPRAKTIMLEQNYRSTQTILDAANAVISKNEDRKPKKLWTALGKGDSI
VGYAADNAQQEAAWISTEIARLAGEEGISYSDVAIMYRANAQSRSLEEALINAGIPYQLV
GGTRFYERREIKDALAYLQAIENPDDDVNMRRILNVPKRGLGPRAEGIITEYAGEHGTSF
WSGISHIDEIPDVPKRTNTKLMEFRDLMSDLRAMAQTSRRPSEVVGEMLDKSGLLSSLKQ
SEDPQDASRVENLSQLQSVAAEFEQNTPDATLQSFLETTALVADSDQLPSESEDSGKVTL
MTLHTAKGLEYPVVFLTGMEQGTFPHSRSLEDSSELAEERRLAYVGITRARRRLYLTRAS
VRSQWGQSNDMLPSQFLDEIPEGLIDWKRRESSMERMQGSWGSGDDEFGGFEDEDFSPAF
GSTRSSGASGASGSSHRSYGSYGSYGSYGSRGGSSRSAGSGSGSSYGSGSNSYGAYGHAG
SSMRSGSRSSAVTTRRRSSSASSGSKAMGAHSGASTPDMANKSGLSVADFSVGDRIAHDK
YGLGTVTEIHDKGPKSIITVDFGSDGVKRLLLRMAPIEKL
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
gtgttttctgacccagatgtgatacaacgccgtgcagaggagctgataggcgatctcaat
cctcagcaggcccaggctgtgcagtactccggtggggcgctgcttatcggagcgggtgcg
gggtctggaaagactcgcgtgcttacgcgcaggatcgcgtggatactcagccaggtaggc
gcgtggccaagccagattcttgccatcacattcaccaacaaggcagcggccgagatgaga
gaacgtctgcagcgtctgatcggccccgtcgcacagcgcatgtgggtttccacatttcac
tccgcctgtgtgaggattctaagacgggatgggaagtccatcggcctgaaatcgggtttc
tccatctatgattcggcagactcggaacgtctcgtgaagatgatcgaaaccgagttcaac
atcgatgtgaagcgctatacgccacgtgccgtgctcagcaggatatcggactacaagaac
aacctgcaggggtggcagacgcagctgaaggaatacgccccggacttccaccctggcgaa
cgggcgcattccatagggcgcttcggcaacgtcgaggaactgtactcggttctctatgcc
gagtatgagcatcgcctggcgatggcgaatgcagtggacttcgacgacttgatcgtccgc
accgtggagcttctgcgcaacgatccgatggtggccgattactaccgtcataaattccgc
tatattctcgtcgacgagtaccaggacaccaaccacgcacaatatgtgctgatccgtgag
ctcgctggaatcgatggcgatgagacaaccgcttcgaccgcaatcggtgctggaaagaca
ggaccggcatgggtgaccgtcgtcggtgactccgaccagtcgatctatgccttccgtgga
gctgacatcagcaacattcgtgacttcgagaaggattttccacgggctaagaccatcatg
ctcgaacagaactaccgttccacgcagacgattctcgatgccgccaacgctgtgatcagc
aagaatgaggatcgcaagccgaagaaactctggacggctctcggcaagggcgacagcatc
gttggatacgccgccgacaacgcccagcaggaagcagcctggatttctaccgaaattgcc
agactcgccggagaagagggaatctcatactcggacgtcgccatcatgtaccgggcgaac
gcccagtcccgttccttggaagaggcgctgatcaacgctggaataccttatcagctggtg
ggcggcactcgattctatgagcgtcgtgagatcaaggatgcgctcgcataccttcaggcg
atcgagaacccggacgacgatgtgaacatgcgacgcatactgaacgttcccaagcgaggc
ctggggccgcgcgccgaaggcatcataaccgagtacgcaggcgagcatggcacgagcttc
tggtcaggcatatcgcatatcgatgaaatccccgacgtcccgaagcggacgaacacgaag
ctgatggagtttcgcgatctgatgtccgatcttcgcgcgatggcgcaaacgtctcgccga
ccttctgaggtagtcggtgaaatgcttgacaagtccgggctgctgagctccctgaagcag
tcggaggatccacaggatgcctcgcgtgtcgaaaatctgtctcagcttcagtccgtcgct
gccgagtttgagcagaacacccctgatgcgacgctccaatcgttcctggaaacgacagcg
ctggtcgcggattcggaccagcttccttccgaatccgaggattccggcaaggttacgctg
atgacattgcataccgccaagggattggaatatccggtcgtgttcctgaccggcatggag
cagggaaccttccctcactcgcgaagtctcgaagattcgtcggagctcgccgaggagaga
cgactggcatatgtgggcataacacgagcaagaagaaggctgtatcttacccgagcatcg
gtgcgttctcagtggggtcagtcgaatgacatgctgccgagccagtttctcgacgagatc
cccgaagggctgatcgattggaagcgccgtgagtcgagcatggagagaatgcagggctcg
tggggcagcggcgatgacgagttcggaggtttcgaggacgaagacttttctcctgcattc
ggttccacacgttcttccggcgcttccggtgcttcaggttcttcgcaccgttcatacggg
tcgtatggctcatacggctcatacggttcgcggggaggttcctcccgcagtgccggttcg
ggctccggctcctcgtatggctcgggatccaactcctatggcgcctatgggcatgcggga
agttcaatgaggtccggcagccgttcgtcggcggtgaccacacgtcgacgttcctcttcg
gcttcctccggttcgaaggcgatgggagcccattccggcgcttccactccggacatggcg
aacaagtcaggattgagcgtggctgacttctccgtgggagatcggatcgcgcatgacaaa
tatggcttgggcaccgtcacggagattcacgacaagggaccgaaatccatcatcaccgtc
gactttggcagcgatggggtcaagcggctgctactgaggatggctccgatagaaaagctc
tga
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