Bifidobacterium fermentum: QN062_03575
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Entry
QN062_03575 CDS
T10739
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bfk Bifidobacterium fermentum
Pathway
bfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN062_03575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfk03019
]
QN062_03575
Messenger RNA biogenesis [BR:
bfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QN062_03575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
YihI
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
XDS51267
UniProt:
A0AB39UQW2
LinkDB
All DBs
Position
complement(892955..894793)
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AA seq
612 aa
AA seq
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MTQEQHRNTSRSRSTGSRSQSRNGKRRGNYSGSRGNNSRKASTTGTQPEKVLIAPPEYHK
GSMRIVALGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPDFNYIRNRLDD
IEALVLTHGHEDHIGAVPYLLKLRPDIPLIGSKLTLAFVDAKCKEHHLEPTKVEVEGRDK
LKVGPFNLEFITVTHSIPDALGVSVKTPAGHIIDTGDMKLDQLPLDHKITDLREFGRLGE
QGVDMLMVDSTNAEVPGFVKPETSIGPALDKAFADATRKIIVASFSSHVHRVQQVVDAAH
KVGRKVVFAGRSMVRNMAIASDLGYLHLPEDTVVDLKQAHDIQDNKIVYMVTGSQGEPMA
ALGRIADGTHRDITINEFDTVILASSLIPGNEHGVYKVINKLTRLGARVINKDNAAIHVS
GHADEGELLYFYNIVQPRCAMPIHGENRHLVANGLIAVKTGVDPKNVVLAEDGDVVDLYH
GQAAVVGSVPCGYVYVDGDSVGELTDEELEKRRILGSEGFVSAFVVVDTETNDVVNGPKI
FLNAVAEDASEFERVRAQIVEQLQDAMMQGTHNTHQLQQIMRRTLGGWIARKLHRSPMIV
PVVADIAQDVEK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgacacaagaacaacataggaacacctcacgcagcagaagcacgggcagccgttcgcag
agccgaaatggcaagcgtcgcggaaactattctggctctaggggaaacaactcccgcaag
gcttcgaccacgggaacacagccagagaaggtccttatcgcacctccggaatatcacaag
ggctcaatgcgaatcgtagccctgggcggtctgggtgaaatcggccgcaacatgaacgtc
atcgaatataacggacacctgctccttatcgattgcggcgttctcttcccagaagaggaa
cagcctggcgtcgatctgattcttcctgacttcaactacatccgcaatcgtctcgacgac
atcgaggcactcgtgctcacccacggtcatgaggaccatatcggggcggtgccgtatctc
ctgaagctgcgtcctgacattccgctcatcggctcgaagctgacgcttgccttcgtcgat
gcgaagtgcaaggaacaccatctcgaaccgaccaaggtggaggtcgagggtcgcgacaag
ctcaaggtcggtccattcaaccttgaattcataaccgtcacccattcgattccagacgca
ctcggcgtctctgtcaagacgccagcgggccatatcatcgacaccggtgacatgaagctt
gaccagctgcctctggaccacaagatcactgatttgcgcgagttcggcagattgggcgag
cagggagtcgacatgctgatggtcgattccaccaacgccgaggttcctggcttcgtcaag
ccggaaacctcgatcggacctgctttggacaaggccttcgccgatgccacgagaaagatc
atcgtcgcgagcttctccagccatgtgcaccgtgtgcagcaggttgtggatgcggctcac
aaggtaggccgcaaggtcgtcttcgccggccgttcaatggtccgcaacatggccatcgcc
tccgacctgggatacctgcatctgcccgaagacacggtcgtggatctgaagcaggcgcat
gacatacaggacaacaagatcgtatacatggtcaccggttcacagggtgagccgatggcg
gcccttggccgcatcgccgatggaacccatcgcgacatcacgatcaacgagttcgacacg
gtgattctggccagctccctgatcccaggcaacgagcacggagtctacaaggtcatcaac
aagctcaccaggctgggcgcaagggtaatcaacaaggacaatgcggcgatccacgtttca
ggccatgctgacgaaggtgagctgctctacttctacaacatcgttcagcctcgctgcgcc
atgccaatccacggcgagaaccgtcatctggtcgccaacggactgattgccgtcaagacg
ggagtggatccgaagaacgtcgtgcttgccgaggacggcgatgtcgtcgatctctatcac
ggtcaggcagctgtcgtcggcagcgtcccatgcggctacgtgtacgtcgacggagactcg
gtcggagagcttaccgacgaggagcttgagaagcgcaggattctgggatccgaaggcttc
gtgtccgcattcgtcgtggtcgatacggaaacgaacgatgtcgtgaacggtccgaagata
ttcctcaacgcggttgccgaggatgccagcgaattcgaacgcgtccgggcgcagatagtc
gagcagctgcaggatgcgatgatgcagggcacgcacaacacgcatcagcttcagcagatc
atgcgtcgaacgctcggtggctggattgcacgcaagcttcatcgcagccctatgatcgtg
cctgtcgtggcagacatagcgcaggatgtggagaagtaa
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