Bifidobacterium fermentum: QN062_03590
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Entry
QN062_03590 CDS
T10739
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bfk Bifidobacterium fermentum
Pathway
bfk03420
Nucleotide excision repair
bfk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QN062_03590
03430 Mismatch repair
QN062_03590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfk03400
]
QN062_03590
Enzymes [BR:
bfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QN062_03590
DNA repair and recombination proteins [BR:
bfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QN062_03590
MMR (mismatch excision repair)
Other MMR factors
QN062_03590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
PAF-AH_p_II
Motif
Other DBs
NCBI-ProteinID:
XDS51270
UniProt:
A0AB39UDD5
LinkDB
All DBs
Position
complement(896852..901234)
Genome browser
AA seq
1460 aa
AA seq
DB search
MTQKKSEEREFRSTAEQQAIIEANIDASQLIVAGAGSGKTMTMTMRIVRLIESGVSPERV
LGLTFTRKAASELLTRVSAAVVGHSSSGADAFLKPEVLTYDAFFQGIVRQYGLLVGFNQS
TQPLSDAGAYQLAAEVVGANIHGLFAHDEAREHDEDWAAEGFSDERLIRRLAAATPSDGD
VASKGFKETVDNVLAIAHACSNSMIGGACTTFEQAARKIHEWDSAFIEQLDSQLEGVEIP
DSQISDAKVSPLDAEKKMSEKTRLKKLEQIRHNRELRCAFQADRLRTIARNREILLALAE
QYQQAKRHANMAEFSDFTLAAYQLVTRFPSIGAQYRRRFSHVFLDEYQDTSTTQALLIAA
LFHPDDDAPRNPSDDAIAASHVIDSSAVSAVGDPFQSIYAWRGASPGAFRTFLREFDRHD
SSAAAHGSDQGTAMHEYSLSQTFRNGALILEAANNLTLPLRREGGIASSAMLHEVDVKHL
RARDGADRGTLGLLATQTLDEEIRGVIDFVKEARRRYGSDSVGTDSSGRVGSGSDIDMHA
PHAAILFRSKTNMPQYCDALYDAGLSYEVVGYSALLERPEIRDLRALLDVLCDHTDIESL
MRLLATPRFNVNPADLNAFAQMVKGINLESQYRGLVEAGKAPANARRDMIGDYVSEHRDS
LPNSVFAIDVLMDDQLESMLRRKGSRIGERGRYLLLQFAEVLRKLQSQAGMGLRAVIRSA
IHALQLDIDVILSQSLHGAGGKPDRSSAQASIDAFEGLVDTFEAELQDGTPSTLRGFVAW
IDSMGKSPEEPGSNVTGHPDVALMTVHQAKGLEWDAVAIVGMKSGTFPSNQGDGLKITET
RPAVIDKFGDIARPAEYVSTARSWMDDATAVPAPIRADADILPRFPHDAEPYSNPLDNLA
GITLAGLEDEVYGQCRDDDTVTWLSQQQEYGSRFHADERRLAYVALTRARHDALLSYSAS
KNAKANGSKVDLSAGSGASNFWIESYQGFAGDVAACHFNDADLSEGQHVAASPASAEGGS
DGASAVTGVDVTEVDITGAETGGTAQTNGFECPEFTGYFIGDHAEDYRAALLTGFSSQHF
DRGQAMQGDQQPDEPSATNSESSQSSGRSASDALLWPMDLDPAVKSALLGSARLVLANPG
ARNQTHASSAESGDAEFEGAELDQPLEGTLAAQAMQVMAERSGRLGKLHGNAEDLGALRR
SGLQVLSAGGQNVTALQALAGDRNDEGERRYWRGIVRPIPRMPSAAAQAGTQFHEWASAF
LSAQDDSTAQQLDGFDGFASIAGEATRRAMLLQLDEQSELPQGEDQRRLMGWKRHLADSR
WARRSVAWVERPIVAAIEGRILKGKLDAVFDGGLLEDDLGIRPVDGRDASDRARRYTIVD
WKTGRRPRSAEEIRVRLLQLDMYRVLLSMMESVDISGIDACLYYVSEPKPEDREIPAEAR
SHDEILRDLDAGLPPLSDED
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagaaaaagtccgaggagcgcgaattccgcagcacagctgagcagcaggccatc
atcgaggccaacatcgatgcaagtcagctcatcgtcgcgggcgcgggttcgggaaagacg
atgacgatgaccatgcgcatagtcaggctcatcgagtccggcgtctcaccggaacgggta
cttggcctgacatttacgcgcaaggcagcttcggagctgctcacgcgtgtgtctgcagcg
gtcgtggggcattccagcagcggtgcggacgcgttcctcaagcccgaggtgcttacctat
gatgcgtttttccaaggcatcgtaaggcagtatgggctgcttgtaggattcaaccaatca
acgcagccattgagcgatgccggtgcataccagcttgcggcagaggtcgtcggcgcgaac
atccatgggctcttcgcgcatgatgaagcacgggagcatgacgaggactgggctgctgaa
ggattttcggatgagaggctgatacgcagacttgccgcggccactccctccgacggcgat
gtcgcatcgaagggtttcaaagagaccgtagacaatgtgcttgccatcgcccatgcctgt
tccaattcgatgatcggcggggcatgcaccacctttgagcaggctgcgcggaaaatccac
gagtgggattccgcattcatcgaacagctggattcgcagcttgaaggcgtcgaaatccct
gattcccagatcagcgatgccaaggtgtcgccgctcgatgccgagaagaagatgagcgag
aagactcggctgaagaaactcgagcagatacggcacaaccgtgaactgcgatgtgcattc
caggcggaccggctgcgtacgattgccaggaaccgtgagatactgctcgcactcgccgag
cagtatcagcaggcgaaacggcacgcgaacatggcggaattcagcgatttcacactggcg
gcatatcagctggtcacgagattcccctcgatcggggcacaatatcgcagaagattctcg
catgtcttccttgacgaatatcaggacacgtcaacgactcaggcgctgctcatcgcagcg
ctgttccatcctgacgacgatgcgccacgcaatccatcagatgatgccattgccgcaagc
catgtcatcgatagttcggcggtgagcgctgtcggcgatcccttccagtcgatctatgcc
tggcgcggagccagcccaggggcattcagaacattcctcagggagttcgaccggcatgac
tcgagtgccgccgcacacgggtctgaccagggcacagcgatgcatgaatattcgctgtcg
cagacatttcgcaatggggcattgattctggaagccgcgaacaacctcaccctgccatta
cgcagggaaggcggcatcgcgtcaagcgcaatgctgcacgaggtcgatgtgaagcacctt
cgagcgagggatggagcggataggggcaccctgggtcttctggcaacgcagactttggac
gaggagatacgtggagtcatcgatttcgtgaaggaagccaggcgtcgctatggatccgac
tccgtgggcaccgacagctcaggtcgtgttggcagtggcagtgacattgacatgcatgcg
ccgcatgctgcgattctgttcaggtctaagacgaatatgccacagtactgcgatgcgctt
tatgatgcaggtctgagctatgaggtggtcggttactccgcgttgctggagcgtccggaa
atccgcgatctgcgtgcattgctcgatgtgctgtgcgaccataccgatatcgagtcattg
atgcgtctgctcgcgacgccacgcttcaatgtgaatcccgcagatttgaacgcctttgcg
cagatggtcaagggaatcaacctcgagagccaatatcgcgggctcgttgaagcgggaaag
gctcctgccaatgcgaggcgcgacatgattggggactatgtgagcgagcatcgtgacagt
ctgcccaacagcgtctttgccatcgacgtgctgatggacgatcagctggagtcaatgctg
cgccgcaagggttctcgcataggcgagcgcggccgctatctgctgctgcagttcgctgag
gttctcagaaagcttcagtcccaggcagggatggggcttcgggcggtcatccgttccgcc
atccatgcactccagcttgatattgatgtcattctttcgcaatcgctgcatggagcgggc
ggcaagcccgaccgcagctccgcccaggcaagcatcgatgccttcgaaggcctggtcgat
accttcgaggcggaattgcaggatggcacgccttccacgctccgcgggttcgtggcatgg
atcgattcgatgggaaagagtcccgaggagccgggcagcaatgtcaccggtcatccagat
gtcgcgctcatgacggtgcatcaggcaaaaggcttggaatgggatgccgtcgcaatcgtc
ggcatgaaatccggcacattcccaagcaatcagggagatggactgaagataacagagacc
aggcctgccgtcatcgataagttcggtgacatcgcgcggccagcggagtatgtctccacg
gcgaggagctggatggatgatgccacggccgttccggcgcccattcgagcggatgcagac
atcctgccgcgctttcctcacgatgcggagccatattcgaacccgctcgacaacctcgcc
ggtatcacactggcaggtctggaggacgaagtgtatgggcaatgccgcgatgacgacacc
gtcacttggctttcccagcagcaggaatatggttcgcggtttcatgccgatgaaagacgg
ctggcgtatgtcgctctcacgcgtgcgcggcatgacgctttgctcagctacagcgcgtcg
aaaaacgccaaggcgaatggctccaaggtcgatttgtctgcaggctccggggcttcgaat
ttctggattgaaagctatcagggcttcgcaggagatgtcgctgcatgtcatttcaacgat
gcggatctttccgaaggacagcacgtggccgcaagtcccgcatcggctgaaggcggctct
gatggggcgagtgccgtcacaggggtagatgtcacagaggtcgatattacaggggctgaa
accggggggactgcccagaccaacggtttcgaatgtcctgaattcaccgggtatttcatc
ggagatcatgccgaggattaccgcgccgctctgttgaccggattctcgagccagcacttc
gatcggggacaggccatgcaaggggaccagcagccagatgaaccgtccgccacaaattcc
gaatcttcgcagtcctcgggcagatccgcttccgatgccttgctttggcctatggacttg
gacccggcggtgaagtctgcgcttctcggctctgcacgactggtgcttgcgaatccgggc
gctcgcaaccagacgcatgcgagctcggccgagtccggtgatgcggagttcgagggtgca
gagcttgatcaaccgcttgaaggcacgcttgccgcacaggccatgcaggtgatggcagag
cgctcgggccgtttggggaagctccatggcaatgccgaagatcttggggcactgcgtagg
agtggtctgcaggtgctttccgcaggaggccagaatgtgaccgcgcttcaggcgcttgca
ggcgatcgcaacgacgagggggaacgcaggtattggcgtggaatcgttcgtcccattccg
cgcatgccttctgccgccgcacaggcagggactcaattccatgaatgggcgagtgcgttt
ctcagcgcacaggatgattccaccgcccagcagcttgacggcttcgatggattcgccagc
atcgcaggtgaggcgacgcgtcgtgcgatgttgcttcagttggatgagcaaagtgagctg
ccgcaaggcgaagatcagcgtcgtctgatgggttggaagcggcatctggctgattcgcgt
tgggctcgcagaagcgtcgcgtgggtcgagcggccgatcgtggctgcaatagagggccgc
atcctgaaaggcaagctcgatgcagtctttgatggcggccttctcgaggatgacttaggc
atccggcccgtcgatggccgcgacgcttcggatcgtgctcgcagatacacgatcgtggat
tggaagacaggtcgacgcccccggtcggcggaagagatccgtgtcaggcttctgcaactg
gatatgtacagggtgctgctgtcgatgatggaatccgtcgatatcagcggcatcgacgca
tgtctgtactatgtcagcgagcccaagccagaggaccgtgagatacctgccgaggctcgc
agccatgatgagatactgcgcgacttggatgcaggactgcctccactttcggacgaggac
tga
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integrated database retrieval system
