Bifidobacterium fermentum: QN062_04315
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Entry
QN062_04315 CDS
T10739
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bfk Bifidobacterium fermentum
Pathway
bfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN062_04315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfk03019
]
QN062_04315
03009 Ribosome biogenesis [BR:
bfk03009
]
QN062_04315
Enzymes [BR:
bfk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QN062_04315
Messenger RNA biogenesis [BR:
bfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QN062_04315
Ribosome biogenesis [BR:
bfk03009
]
Prokaryotic type
rRNA processing factors
QN062_04315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Ribosomal_L5e
Motif
Other DBs
NCBI-ProteinID:
XDS51400
UniProt:
A0AB39UCZ7
LinkDB
All DBs
Position
complement(1060818..1063883)
Genome browser
AA seq
1021 aa
AA seq
DB search
MQRAARSIVPNSQEEGLVENKTSKNTTEQSEQTERPHRRRGGRRVVRVAGAANADVPVRV
ESRAEVMQSPEGEQVREDGASSSRSVGGRPSKATGKSDEGPKAGRTRRGARGESALGTSR
NQNRSSGVDKVEFEAPVVKESKESTGASTTASPEDSKDDSKKESAGRRSGRRSSRKSRSI
EFKEASDIEARDASRTEEEHGDRRSRAQKAVESLPTTLEHHATKAARPMTSLLFQEPVIP
TEKTWTNAWNADEDDDDSDGKARHQRRSASATSTRRAGEGSRAEQDSEDAARTDSQGDES
SESRHKTRRSRRSQEEVQREPRARRAQRLNAQERRAAAEVEQIEGDLEFDEIRYAPIDED
EFRLSKATKRRRSRGSRKDDDNRHEADHNGNGRSGGSDEVSNDYDQDEDFSENRHHRDEG
SESDGRDDEQLSGVRRRRRRTHENDADEDSGYETTGTRRRRRRRSAKVSESSRSEENSSS
ASRRSRKQQYIDEITDIQGSTRLEAKRQRRRDNRRDRSRQMQLVEQDFLARRENVKREMV
VREKERHTQISVIEDDILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNG
VLYAGEVNWDTTRLDGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVL
VPSGGMTGVSRKLTERERTRLKSIVAKIAPKDMGVIIRTAAENASEEAITKDLESLTHQW
EAIERKRSTTVILKKPKLLQGEPDVAIRVVRDIFNDEFQSLIVQGDKVYGRIEEYLDSMA
PDLRDRLSKWNPADHQGMDVFDTWHIDGQLRKGMERQVYLPSGGSLVIDRTEAMTTIDVN
TGRYIGKGKSLEETVTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLKRLL
ECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILHDEPTVSASY
DDPYALKGGDPFVKTKHGHHEAQEQGGSGVSSPDVKEKLAKIAAAAQAASTEPQEADDSE
E
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtgccgcgaggagtatcgtgcccaattcgcaagaagagggtcttgtcgagaac
aagacctcgaagaatacaaccgaacagtccgaacagaccgaacgcccacatcgtcgcaga
ggtggaagacgcgtcgttcgtgtcgccggagccgccaatgccgatgtgccggttcgcgtc
gagagccgggcggaagtcatgcagtcacccgaaggcgagcaggtcagggaagacggcgcc
agttcctcacgcagtgttggtggcaggccgagcaaggcgaccggcaagtcggatgaagga
cccaaggcaggcaggacccgtcgcggagccagaggcgagtcggcattggggacttcgcgg
aatcagaatcgctcgtctggagtggacaaggtcgaatttgaagcgcctgtcgtgaaagag
agcaaggaatcgacaggggcatccacgactgcctcccctgaggattccaaggatgattcc
aagaaggaatcagctggacgacgttcgggccgcagaagctcgagaaagtccaggagcatc
gaattcaaggaagcctcggacatcgaggcaagagatgcatctcgcaccgaagaggagcat
ggagacagaaggtctcgcgctcagaaggcagtggagtcgctgccaacgacgttggagcat
catgcgaccaaggcagcgcggccgatgacctcgcttttgttccaggaaccggtcataccg
accgaaaagacctggacgaacgcatggaatgccgatgaggatgatgacgattccgacggc
aaggcgaggcatcagagacgttcagccagtgccaccagtaccaggcgtgccggtgaaggc
tccagggccgaacaggattccgaggatgctgcgcgaacggactcccaaggcgacgaatct
tccgaatccaggcacaagacccgccggtcgcgtcgttctcaggaggaggtccagcgtgaa
cctcgtgcaaggcgtgcgcaacgtctgaatgcacaggaacgcagagccgcggctgaggtc
gaacagatagaaggagatctcgaattcgacgagatccgctatgcgcctatcgacgaggat
gaattcagactgtccaaggcgacgaagcgccgtcgcagccgcggttcgcgcaaggatgac
gacaatcgtcacgaggcagaccacaacggcaatggacgcagtggcggcagcgatgaggtc
tccaacgactacgatcaggatgaggacttcagcgagaatcgtcaccatcgcgatgagggc
agcgaaagcgatggcagggacgatgagcagctcagcggcgttcgccgtcggcgtcgtcgc
acccatgagaacgatgctgacgaagactcgggatatgagacgaccggaacccgacgccgc
cgcagaaggcgctcggccaaggtctccgagtcttcccgttccgaggagaattcctcctct
gcgtcgaggcgttcccggaagcagcaatacattgacgagataaccgacatacaaggctcc
acaaggcttgaggccaagcgtcagcgtcgaagggacaacaggcgggaccgttcgcgccag
atgcagctcgtcgagcaggacttccttgcccgccgggagaacgtcaagcgagagatggtc
gttcgcgagaaggaacgtcacactcagatatcggtaatcgaggatgacatcctcgtcgag
cattatgtatccgacattcaggaagtcgcgacggtaggcaacatctatcttggccgtgtg
cagaacgtgctgccaagcatggaagccgcgttcgtcgacatcggtcaggcgagaaacgga
gtgctgtatgcgggagaggtgaactgggacaccaccaggctcgacggccagccacgaagg
atcgaactcgccttcaagtcgggcgatccggtgctcgttcaggtcacgaaggatcccatc
ggccacaagggtgcacgtctgacctcccaggtcacgctggcagggcgcttcctcgtgctc
gtcccctcagggggaatgacgggcgtcagccgcaagctcaccgagcgcgaacgcactcgg
ctgaagtccatcgttgccaagatcgcaccgaaggatatgggcgtcatcatccgcactgcg
gccgagaacgcctctgaggaggccatcaccaaagacctcgagagccttacccatcagtgg
gaagccatcgaacgcaagcgcagcacgacggtcattctcaagaagccgaagttgcttcag
ggcgagcctgacgttgcgattcgggtcgttcgcgatattttcaacgatgagttccaatcc
ttgatcgttcagggcgacaaggtctacgggaggatcgaggaatacctcgattccatggcc
ccggatctgagggacaggctgagcaaatggaatcccgccgaccatcagggcatggatgtc
tttgacacatggcatatcgacggtcagctccgcaagggcatggagcgccaggtatacctg
ccttcgggcggttcgctggtcatagaccgcaccgaggccatgacgacgatcgatgtgaac
acagggcgctacatcggcaaggggaagtcactcgaggagacggtgacacgctgcaacctc
gaggcggccgaagagatagcgcgtcagctcagactgcgcgatatcggtggcatggtcatg
atcgatttcgtggatatggtcatgcccgcgaatcgcgatctggtgctgaagcgtctgctg
gagtgcctcgcacgggatagaacgaagcatcaggtcgccgaggtgacttcgctcggcctt
gtgcagatgacgagaaagcgtgtcggacaggggctcgtcgaggcattctccgaagagtgc
ccgacctgcaagggccgtggcttcatactccatgatgagccaaccgtttcggcatcatat
gacgatccctatgccttgaagggcggcgatcccttcgtcaagacaaaacatgggcatcac
gaagcccaggagcagggaggatcgggagtctcgtctcccgatgtcaaggagaagcttgcg
aaaatcgcggcagcggctcaggccgcatccacggagccacaggaagcggacgattcggag
gaataa
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integrated database retrieval system
