Bifidobacterium fermentum: QN062_09620
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Entry
QN062_09620 CDS
T10739
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfk Bifidobacterium fermentum
Pathway
bfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN062_09620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfk03019
]
QN062_09620
03400 DNA repair and recombination proteins [BR:
bfk03400
]
QN062_09620
Enzymes [BR:
bfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QN062_09620
Messenger RNA biogenesis [BR:
bfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QN062_09620
DNA repair and recombination proteins [BR:
bfk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QN062_09620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
Glyco_hydro_57
ResIII
Motif
Other DBs
NCBI-ProteinID:
XDS50615
UniProt:
A0AB39UAF4
LinkDB
All DBs
Position
2377901..2379871
Genome browser
AA seq
656 aa
AA seq
DB search
MVDDGVRAQAALHRYFGYESFRKGQKGVVSAIMEGRDSLAVMPTGAGKSVCYQIPSVLLP
GLTIVISPLLSLMRDQVDALDDAGIAAAFLNSTQTFDEQREVMRVARDRGCHLLYVAPER
LTEPHFVETCRHLDISVIAVDEAHCISQWGQDFRPAYLDIGSFIAALPRRPVVAAFTATA
TEKVQDDIVRILQLSDPLLTVTGFDRPNLFLDVQRMSKSEKEAWILRYVSDHADESGIIY
CSTRKETNELTDRLQSEGIRAARYHAGLTHQERRESQHAFVNDDIQVVVATNAFGMGIDK
SNVRYVIHHNMPESIEAYYQEAGRAGRDGEMSRCTLLWNESDIVLRRRLLQSGGANDHLT
EEEEMRVQQTRGRLLQAMIGYCRTVSCLHRYILDYFGQRRAGSVQGERASEEKSSSPASS
GDESTSMQSEQSVSPLPCGRCSNCMSSVRSDDVTKIALAIGRCVSATNQRFGMTMIVRIL
RGSQSQQLLQLGLERTPLFAALKEQSEATVRDVLNQMTIDDLLAVTPGRMPIIVFGTEAS
RMVAPGFHYEIKHAVRRKSARKTLAPGAAIRDEQDRSGENPMDEDLFQRLRAVRKEIATE
IGKPPYIVFSDRSLRDMVRHRPTDRDSMLQVNGVGEHKWDSYGQRFADAIAEFEAQ
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggttgatgatggtgttcgcgcgcaggctgcgctgcatcgttatttcggctatgaatcc
ttcagaaaagggcagaagggcgtggtttcggccatcatggaaggtcgcgactccttggcc
gtgatgccgaccggagctggaaagtcagtctgctatcagattccatcggtgctgcttcct
gggttgacgatcgttatttcgccactgctttcgctgatgcgcgatcaggtcgacgccttg
gatgacgccggcatagccgcggcgttcctgaattcgacccagaccttcgatgagcagcgt
gaagtcatgcgggtggcgcgagacaggggatgccacctcctctatgtcgcgcccgaacgg
ctgaccgagcctcatttcgtagagacatgcagacatctggacatatcggtcatagcggtg
gacgaggctcactgcatatcgcagtggggacaggatttccgccctgcctatcttgacatc
ggctcattcatcgccgcacttcccagacgcccggtcgtcgcagccttcaccgcgaccgcg
accgagaaggtgcaggacgacatcgttcgaatcctgcagcttagcgatcctctcctcacc
gtcacaggctttgacaggcccaatctcttcctggacgttcaacgcatgtccaagtcagag
aaagaggcctggatcctgcgctacgtttcagaccatgcagacgaatcgggcatcatctat
tgctcgacacgcaaggaaaccaacgagctgacagatcgattgcagtccgaaggcattcgt
gctgcccgataccatgccggactgacccatcaggaacgccgtgaatcgcagcacgccttc
gtcaacgatgacatccaggtcgtcgtggctaccaatgcctttggcatgggcatcgataag
tcgaacgttcgatatgtgattcaccacaacatgcctgaaagcatcgaggcctattatcag
gaagcgggaagagccgggcgagacggcgagatgtcacgttgcacgctgctgtggaacgag
tcggacatcgtcctgagaagacggctgcttcagtccggtggcgcgaacgaccatctcacc
gaggaagaggaaatgcgggtccagcagactcgcggcaggctgcttcaggccatgatcggc
tattgccgcaccgtttcgtgccttcatcgctacattcttgactatttcggtcagcgccgt
gccggatcggttcagggggagcgcgcgtctgaagagaagtcttcgagtccggcttcgtct
ggggatgaatccacatccatgcaatcggagcagagcgtttcgccactgccatgcgggcgc
tgttcgaactgcatgagttcggtgagaagcgacgatgtcacgaagatcgcgctcgcgata
ggcaggtgtgtgagcgccaccaatcagcgcttcggcatgacgatgatcgtgcgcatcctg
cgtggatcacaatcccagcagcttctgcaactggggctggaaagaacgccccttttcgca
gcattgaaggagcagtccgaggccacggttcgagatgtgctgaaccagatgactattgac
gacctgcttgccgtcacacctggccgcatgcccatcatcgttttcggaaccgaggcatcg
aggatggtcgcacccggtttccactatgagatcaagcatgccgtccgcagaaagagtgcg
aggaagactcttgctccaggtgctgcgattcgtgatgagcaggatcgttccggtgagaat
ccgatggacgaggatctcttccaacggcttcgggcggtacgcaaggagatcgccaccgag
atcgggaagccgccatatatcgtcttttccgaccgtagcctgcgcgacatggttcgtcat
cgtccgacggacagggattccatgcttcaggtcaacggtgtcggcgagcataagtgggat
agctacggacagcgtttcgccgatgccatcgctgagttcgaggcgcagtga
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