Brevibacillus formosus: BP422_12385
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Entry
BP422_12385 CDS
T04939
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bfm
Brevibacillus formosus
Pathway
bfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BP422_12385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfm03019
]
BP422_12385
03009 Ribosome biogenesis [BR:
bfm03009
]
BP422_12385
Enzymes [BR:
bfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BP422_12385
Messenger RNA biogenesis [BR:
bfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BP422_12385
Ribosome biogenesis [BR:
bfm03009
]
Prokaryotic type
rRNA helicases
BP422_12385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
RelE
Motif
Other DBs
NCBI-ProteinID:
ASJ54276
UniProt:
A0A220MGR2
LinkDB
All DBs
Position
complement(2785819..2787408)
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AA seq
529 aa
AA seq
DB search
MTIFSDFPLHKSILQAIHDMGFEEPSPIQAACIPKVLDGGDLIGQAQTGTGKTAAFGIPL
VEKITPANRVQAIVLTPTRELAIQVAGELLRISKYNKVRTLPIYGGQSIGHQIRALRQGV
QIVVGTPGRVMDHLRRKTLKLDHVHTLVLDEADEMLDMGFIEDIETIITHMPEERQTLLF
SATMPPEIKRLATRYMKQPQTIAVSREEVTAPLIEQVYYKVFDRNKVESLCRILDSEDVE
LGIIFCRTKRGVDELSEVLQSRGYLADGLHGDLSQAQRDKVMNAFREGSIEFLIATDVAA
RGIDVGNVSHVINYDIPQDSESYVHRIGRTGRAGRKGIAMTLVTPREVRQMMFIQKQTKA
QVLSRNVPSLEEVAERKQEQLREQLTSLLESDAIADMYQKVADSLVGQYPAEKVAAAALH
LAFHTEAGQGQEVEAYNFGETGAAKGMVRFFLNVGRNANMKPQDLVREISESVGIPGKSV
GRIDIFENFTFVEVPEEVAAFVYESLRQTRINGKRINLEPAKPRGAKRS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgacgattttttccgattttcctttacataaatctattctgcaagcgattcacgatatg
ggcttcgaggagccatcaccgattcaggcggcttgcattccaaaagttttggatggcgga
gacctgatcggtcaagcacagacaggtactggtaagactgctgccttcgggattccactt
gtagaaaagattacgcctgccaatcgtgtacaagcgatcgtgctgacccctactcgtgag
ctggctattcaggttgcaggagagctcttgcgcatctccaaatacaacaaagttcgtacg
ctgccaatctatggcggacaatcgatcggacatcaaattcgtgcactgcgccaaggtgta
caaatcgttgtaggtactcctggccgtgtcatggaccacttgcgccgcaaaacattgaag
ctggatcacgtacacacactcgttttggatgaagcggatgaaatgctggacatgggcttc
atcgaagatatcgagacgatcatcacacatatgccggaagagcgtcaaaccttgctgttc
tctgcgacaatgccgccagaaatcaagcgtttggctacccgttacatgaaacagccgcaa
acgatcgcggtgagccgtgaagaagtaacggcgccattgatcgaacaggtatactacaaa
gtgtttgaccgtaacaaagtagagagcctctgccgtattctggacagtgaggatgtagag
ttgggaatcattttctgccgtaccaagcgcggtgtagatgagttgtccgaagtgctgcaa
tcccgcggataccttgcggacggcttgcatggcgacttgtcacaggcacaacgtgacaag
gtcatgaatgcgttccgtgagggctcgattgaattcctgatcgcgacagatgtagcagca
cgtggtatcgacgtaggaaacgtctctcacgtaatcaactacgatattccacaagactct
gagagctacgtacaccgcattggccgtactggtcgcgcaggtcgcaaaggaattgcgatg
acgttggttacgcctcgcgaagtaagacaaatgatgtttatccaaaagcagacaaaagca
caagtgctttctcgcaatgttccttccctggaggaagtggctgagcgcaaacaagaacaa
ttgcgtgaacagttgactagccttttggaaagcgatgcaatcgcagatatgtatcaaaaa
gtagcggattctctcgtaggtcaatacccggctgaaaaagtagctgctgctgcattgcac
ctggcattccataccgaagcaggacaagggcaggaagtagaagcgtacaactttggtgaa
acgggtgcagcaaaaggcatggttcgcttcttcctgaacgtaggccgcaatgcgaacatg
aagccacaggatctggtacgtgagatctctgaatctgtgggtattccaggaaaatcagta
ggtcgcatcgacattttcgagaacttcacgtttgttgaggttccagaagaggtagcggca
ttcgtatatgagtcactgcgtcaaacacgaatcaacggaaaacgaatcaatctggagcct
gcaaagcctcgcggagcgaagcgttcctaa
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