Brevibacillus formosus: BP422_23935
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Entry
BP422_23935 CDS
T04939
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfm
Brevibacillus formosus
Pathway
bfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BP422_23935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfm03019
]
BP422_23935
03400 DNA repair and recombination proteins [BR:
bfm03400
]
BP422_23935
Enzymes [BR:
bfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BP422_23935
Messenger RNA biogenesis [BR:
bfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BP422_23935
DNA repair and recombination proteins [BR:
bfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BP422_23935
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Helicase_Sgs1
DUF116
Motif
Other DBs
NCBI-ProteinID:
ASJ56345
LinkDB
All DBs
Position
complement(5194350..5196125)
Genome browser
AA seq
591 aa
AA seq
DB search
MLDKAQEILRKYFGYESFREGQKKIITSLLAGHDTVGIMPTGGGKSICYQVPAMLQDGVT
IVISPLISLMKDQVDVLVSMGIPATQINSSLDYSEVRDRLRMAARGEYKLLYIAPERLES
ETFQNLIQDVPISFVAVDEAHCVSQWGHDFRPSYLAIARFLQSLPQRPLVAALTATATPE
VTEDIKRQLELKDERLFITGFGRDNLILSVRKGENRREFIQAYLRANKQQAGIIYAATRK
DVDALHADLDKRGFAVTKYHAGLTEEERAANQEAFLYDDVRTMIATNAFGMGIDKSNVRY
VIHYNMPKNLEAYYQEAGRAGRDGEPSECILLFQPQDIQTQTFFIEQNQLLDERKELEYK
KLYAMIDYCRTPRCLQQNIVQYFGETDAVECGRCGNCTDETELSDITLEAQKIFSCVKRM
RERFGAALVAQVLKGSKNKKVTQFSFDQLPTYGLMKEYKEKEIADLIQLLIAEGYLQVTE
SQYPIVKLGERALPVLRGEERVVQKISIRPVQLTEDDELFEHLRALRKEISTRQKVPPYV
IFPDSTLKEMSSVCPTDKQAMLKIKGVGEAKFEKYGELFLECLQNYAAIKS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
ttgttagataaagcgcaagagattttacgaaagtattttggctacgaatcatttcgagaa
ggccagaagaaaatcatcacgagcctgttagccggacatgacaccgtaggcatcatgcca
accggcggcgggaaatccatctgttatcaagtaccagcgatgcttcaggacggcgtaacc
atcgtgatctccccactcatctcgctgatgaaggatcaggtcgacgtactggtcagcatg
ggcattcccgccacccaaattaacagctcactggattatagcgaggttcgcgatcgactg
cgtatggcggcgcggggagagtacaagctgctgtatatcgccccagagcgtttggaatcc
gaaacgttccaaaacctgattcaggatgttccgatctcgtttgtggcagtggacgaagcg
cattgtgtctcgcagtgggggcatgatttccgtccgagctatttggcaattgcccgtttt
cttcaatccctgccccagcgcccgctcgtcgcagccttgacggcgacagcgacaccggag
gtaaccgaggacatcaagcgacagctagaattaaaggacgagcgcctttttatcacaggg
tttggcagagacaatctcatcttgtctgtacgcaagggggagaaccgacgggaattcatc
caggcgtacttgcgggcgaataagcagcaggcgggtattatttatgcggcaacgagaaaa
gacgtggacgccttgcatgcagatttggacaagcgtggctttgctgtgaccaaataccat
gcaggattgacggaagaggagcgtgcggccaaccaggaagcattcctgtacgatgatgtc
cggacgatgatcgcgaccaacgcatttggcatgggcatcgacaagtctaatgtgcgctac
gtcattcattacaacatgccgaaaaacctggaggcgtattaccaggaagcaggccgtgcg
ggacgcgatggggagccaagtgagtgtatcctgctgtttcagccccaggatatccagacg
caaacgtttttcatcgagcagaatcaactgctggacgagcgcaaggagttggaatacaaa
aagctgtacgcgatgatcgactattgccggacgccgcgctgcttgcagcaaaacatcgtg
caatacttcggcgaaacagatgctgtcgagtgcggacgctgcgggaactgcactgatgag
accgagctgtccgatattacgctcgaagcacagaagattttctcctgcgtcaaacgtatg
agagagcgctttggtgccgcactcgtcgcgcaggtactgaaaggctccaagaataaaaag
gtcacccagttttccttcgatcagttgcctacgtatggtttgatgaaggaatacaaggaa
aaagaaatcgcagacctgattcagctcctcattgccgaagggtatctgcaagtaacggag
agccaatatccaatcgtaaagctgggggagcgggcattgcctgttctgcggggcgaagag
cgcgtcgtgcaaaaaatctcgattcgccctgtgcagttgacagaggatgacgagttgttc
gagcacctgcgcgcgttgcgcaaggaaatctcgacgcgacaaaaagtaccgccgtacgtg
attttcccagacagtaccttgaaggaaatgagcagtgtttgcccgactgacaagcaggcc
atgctcaagatcaaaggagtaggcgaggcgaaatttgagaagtacggagaactctttctg
gagtgtttgcagaactatgcagcgatcaagtcgtga
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