Paraburkholderia fungorum: OI25_2101
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Entry
OI25_2101 CDS
T03799
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI25_2101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfn03019
]
OI25_2101
Enzymes [BR:
bfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OI25_2101
Messenger RNA biogenesis [BR:
bfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OI25_2101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
HI1480
Utp25_C
P-loop_SecA
DegT_DnrJ_EryC1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJZ59136
UniProt:
A0AAU8TFB1
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All DBs
Position
1:complement(2357531..2359108)
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AA seq
525 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNTMPAVTSASGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDNISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAISLVCVDELQLLK
DIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQSQGAPKRDGAQRDG
ARRDGASAAKPAQRSGQRPSNGQQQPKPQAAKPAGNGGQPRRDGQRHDAQPRAAAHEGGA
AQHAPRKPQGAKPQGGNPGALLGGAKPRNDAPRGGQPTRSGQRGR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgctggtccgcgctgtccacgaactcggc
tacaccaccccgactccgatccagacgcaagcgatccccgctgtgctcaacggcggcgac
ctgctggccggcgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcgtctgaacaccatgcccgccgtcacctcggcctcgggcaagcgcgtcgtgcgcgca
ctgatcctcacgccgacgcgcgagctggccgcccaggtcgaagaaagcgtgcgtgcatac
ggcaagtatctgaagctgaagtcgaccgtgatgttcggcggcgtcggcatcaatccgcag
atcggcgcgctgcgcagcggcgtggacatcgtcgtcgcaacgcctggccgtttgctcgac
cacatgcagcagaagaccatcgatctgtcgcatctcgagattctcgtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacatcaagcgcgtgcttgcgaagttgccg
ccgaagcggcagaacctgctgttctcggctaccttctccgacgagatcaagacgctcgcc
gacaatctgctcgactcgccggcgctgatcgaagtcgcgcgccgcaacacgacggccgag
acggttgcgcagaagattcacccggtcgaccgcgacaagaagcgtgaactgctcacgcac
ctcatcaagcaacacaactggttccaggtgctggtgttcacgcgtaccaagcacggcgcg
aaccgcctcgccgaacagttgacgaaagacaacatcagtgcgctggcgattcacggcaac
aagagtcagtcggcccgtactcgtgcgctcgccgagttcaaggacggcacgctgcaagtg
ctggtcgcgaccgacatcgcggcgcgcggcatcgacatcgatcaactgccgcacgtggtc
aactacgatctgccgaatgtgccggaagattacgtgcaccgcatcggccgcacgggccgc
gccggcgcgacgggcgaggcgatctcgctcgtgtgtgtcgacgaactgcaactgttgaag
gacatcgagaagctgatcaagcgtccggtgccgcaggaagtgatcgccggtttcgaaccg
gatccgaccgcgaagccggagccgattctgcgccgcggccaaggtggtggcggcggtggc
ggtcgttcgccgcgtcagagccagggtgcgccgaagcgcgatggcgcccagcgcgatggc
gcccgccgtgatggcgcgtcggctgccaagccggcacaacgctcgggccagcgcccatcg
aatggtcagcagcaaccgaagccgcaagctgcgaagccggcaggcaacggcggccagcca
cgccgcgacggccagcgccacgacgctcagccgcgtgcagcggcgcacgaagggggcgcc
gcgcaacacgcgccgcgcaagccgcaaggtgcaaaaccgcaaggcggcaacccgggtgca
ctgctcggcggcgccaagccgcgcaacgacgcaccgcgcggcggtcagccgacgcgcagc
ggccaacgcggccgttaa
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