Paraburkholderia fungorum: OI25_2499
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Entry
OI25_2499 CDS
T03799
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI25_2499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfn03019
]
OI25_2499
03009 Ribosome biogenesis [BR:
bfn03009
]
OI25_2499
Enzymes [BR:
bfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OI25_2499
Messenger RNA biogenesis [BR:
bfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OI25_2499
Ribosome biogenesis [BR:
bfn03009
]
Prokaryotic type
rRNA processing factors
OI25_2499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF1062
Motif
Other DBs
NCBI-ProteinID:
AJZ58364
UniProt:
A0AAU8SXJ8
LinkDB
All DBs
Position
1:complement(2792705..2795986)
Genome browser
AA seq
1093 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRSARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEK
PAPSAPVRPATPAPVAVTPASGGFIGWLKNLFGMQPAAPAPVAPAPTEKQARPQRGERTE
RGERTGERGGDRNRNRRGGAGARDAAGRGEGASGGRQAQGQQPSQRREEREPREGREGRE
GREPREARESREPRANREQREPREAREGREPREAREPREGREARENRGADRAETVDGAPR
AERGERRERGERAERGERRKQQPEAAEALTQNDAQTAEELAQNQTALGENGAPVDQEAVA
REGEERRRRRRGRRGGRREREEDVNGNLAADVAEGESDTANVADEAPVRTAHQPVEHKAE
VNEANDVKPVEVVVAAVATQTAVVSELHAVAETPALAVEQAAKTETVVPVAQAPEAPVAQ
AAAAPVEAAQVAPAVSETVSLVEPVAHAETVAEPAVETRVEAPAEARIETPAVAPVVETQ
AAPAPVETAAPVAVVEAPAAEPAPQAEIVAAQPAAAAVAPAVEAIAAPAPVEAAPAAAAP
QAARSAAVSAETLKPVLEQAGLVWVNTDADKLRAAQEAAAQAARPVRVGRERKALPPLET
APMQMVETGKHPQ
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgttcaacgcgacgcagcaggaagaactgcgcgttgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atttacaagggcatcatcacccgcatcgagccttcgctcgaagcgtgtttcgtcaactac
ggcgaagaccgccacggctttttgccgttcaaggaagtcgcccgccagtacttccgcgac
ggcgtcgacatgcgctccgcgcgcatccaggacgccctgaaagaaggtcaggaactgatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcggccctcaccaccttcatctcg
ctcgccggccggtatctggttttgatgccgaacaacccgcgcggcggcggtgtgtcgcgc
cggatcgaaggcgacgaccgtcaggaactgcgcgaaaccatggcgcagctgcaattgccc
gaaggcatgagcatcatcgcgcgcacggccgggattggccgcagcgccgaagagctgcag
tgggacctgaactacctgatgcaactgtggcgcgccatcgaggctgcgtcgcaaagcggt
tcgagcggccagccgatgctgatctatctcgaatcgagcctcgtgattcgcgcgattcgc
gattatttccagccggatatcggcgaaatcctgatcgacaccaccgaaatccatgaccag
gcccgcgccttcatggatatcgtgatgccggacaatgtcagcaaggtgaagcggtaccac
gacgacgtgccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgcgtattcg
cgcacggtgccgctgccctcgggcggcgctatcgtgatcgaccacacggaagcactggtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgcggacatcgaggaaaccgccgcg
cgcaccaacctcgaagccgccgacgaagtagcccgccagttgcgtctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
caacgcctgaaagacgcgttgaagcacgaccgtgcgcgcgtccagatgggcaagatctcg
cgtttcggcctgatggaactgtcgcgtcaacgtctgcgcccggccttgtcggaaggcagc
cacgtgacctgcccacgctgtaacggcacggggcacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccat
tgccaggtgccggtcgaagtaaccgccttcctgttgaatgaaaagcgcgcggaaatcaac
aagatcgagtcgcgtttcaaggtcaacgtcgttctgattccgaacaagcacctcgacacg
ccgcattacaagctcgagcgactgcgtcacgacgacgcgcgcctcgacgagccgcgcgct
tcgtggaagatggccgaagaagcggcccgcgaactggaatcggaaaccggttacagcaag
cgcgctgaagaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagaag
ccggccccgagcgcgccggtccgcccggcaaccccggccccggtcgctgttactccggcc
agcggcggctttatcggctggctgaagaatctgttcggcatgcagccggccgcgccggcg
cctgtcgcaccggctccgaccgaaaagcaggcgcgtccgcagcgcggcgaacgcacggag
cgcggtgagcgcaccggcgaacgcggtggcgatcgcaaccgcaatcgccgtggcggcgca
ggcgcacgcgatgcagcgggtcgtggcgaaggcgcaagtggcggtcgtcaggctcagggc
cagcagccgtcgcagcgtcgcgaggaacgcgaaccgcgtgaaggtcgtgagggtcgcgaa
gggcgtgaaccgcgcgaggctcgtgaatcgcgtgagccgcgtgccaaccgtgagcagcgc
gagccgcgtgaggcccgtgaaggccgcgaaccgcgcgaggctcgtgagccgcgtgaaggt
cgtgaggcccgcgaaaatcgtggcgccgaccgtgcggaaaccgtcgacggcgcaccgcgt
gccgaacgcggcgagcgccgtgagcgcggcgagcgtgctgaacgtggcgaacgccgcaaa
cagcagccggaagcagcagaggcactgacgcaaaacgacgcgcaaacagcggaagagttg
gcgcaaaaccagaccgccttgggcgagaacggtgcgccggtcgatcaggaagcggtggcg
cgtgaaggtgaagagcgccgtcgccgccgtcgcggccgtcgtggtggccgtcgtgagcgc
gaagaagacgtcaacggcaacctggctgcagacgtcgcggaaggcgaaagcgacaccgcc
aatgtggccgacgaagcaccggtacgcaccgcgcatcagccggtcgaacacaaggctgaa
gtcaacgaagcaaacgacgtcaagccggtggaagtggttgtcgctgctgtggcgacgcaa
accgctgtcgtcagcgaactgcatgcagtagccgaaacgcccgctctggcggtcgagcag
gcggcgaagacggaaacggttgtgccggtcgcgcaagcaccggaagcaccggtggcgcaa
gccgcagccgcgccggtcgaagccgcgcaagttgcgccggctgtcagcgagacggtttcg
ctcgtcgaaccggtcgctcatgccgaaactgtggctgaacccgcagtcgagactcgcgtc
gaagcccccgctgaggcgcggatcgaaacaccggcagtagccccggttgtcgaaacgcaa
gccgcaccggctccggtagaaaccgcagcccccgtggccgtggtcgaagcaccggccgcc
gaaccggcgccgcaagccgagatcgtcgcagcacaaccggccgccgcggccgttgctccg
gcagttgaagcgatcgccgcgccggcgccagtcgaagcagcgcccgccgcagccgcaccg
caagcagcgcgcagcgccgctgtgtcggcggaaaccctgaagccggtgctggaacaagcc
ggtctcgtctgggtgaacaccgacgccgacaagctgcgggccgcgcaggaagcggcagcg
caggcagccaggccggttcgcgtaggtcgcgagcgtaaggcattgccgccgctcgaaacc
gcgccgatgcaaatggtggaaaccggtaagcatccgcagtaa
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