Paraburkholderia fungorum: OI25_3220
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Entry
OI25_3220 CDS
T03799
Name
(GenBank) 2'-5' RNA ligase superfamily protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bfn
Paraburkholderia fungorum
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfn03016
]
OI25_3220
Enzymes [BR:
bfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
OI25_3220
Transfer RNA biogenesis [BR:
bfn03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
OI25_3220
BRITE hierarchy
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GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
AJZ59253
UniProt:
A0AAU8SYQ9
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All DBs
Position
1:3618863..3619507
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AA seq
214 aa
AA seq
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MPEQLWLPGLEAPPTPTDGLFFAIFPDAGTATGIAKLAQQLCGETRSKSKPLAAGRLHVT
LVHLGNFAGGLPQARVDAAMRAAASIQMKPFTVEFDKVVSFAVKPRPGPLVLGGDDGLVG
LHALHDALGLALQDAGFGDRAVSPSTPFTPHVTLAYGMPPLPTRPVESVCWNVREFALVH
SLLGRTRHIALARWPLVGANSGSLMPSVPQIRRI
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaactctggttgcccggtctcgaggcgccgccaacgcccacagacgggctc
tttttcgcgatttttcccgacgccggcacggcaaccggcattgcgaagctcgcgcaacag
ctatgcggcgaaacgcgctcgaagagcaagccgctcgcggcgggccgattgcacgttacg
ttggtccatctcgggaatttcgccggcggattgccgcaggcgcgtgtcgatgcggcgatg
cgcgcggccgcgtcgatccaaatgaaacccttcacggtcgagttcgacaaggtggtgagc
ttcgcggtgaaaccgaggccggggccgttggtgttgggcggagacgacggcctcgtcggg
cttcatgcgctgcacgacgcgctcggactggccttgcaggacgcaggctttggcgatcgc
gcagtgtcgcccagcacgccgttcaccccgcacgttaccctcgcttacggcatgcctcca
ttgcccacgcgtcctgtcgagtctgtttgctggaacgtgcgcgaatttgcgctggtgcac
agcctgctcgggcgtacgcggcatatcgcattggcccgatggcccctggtcggtgcgaat
agcggctcattgatgccaagcgttcctcaaatacgccggatctga
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