Paraburkholderia fungorum: OI25_34
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Entry
OI25_34 CDS
T03799
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
OI25_34 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfn03400
]
OI25_34 (recB)
Enzymes [BR:
bfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
OI25_34 (recB)
DNA repair and recombination proteins [BR:
bfn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OI25_34 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AJZ60392
UniProt:
A0AAU8T2H7
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All DBs
Position
1:complement(41446..45141)
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AA seq
1231 aa
AA seq
DB search
MSGAVHHHALVAQELDVFACSLEGVNQIEASAGTGKTWNICALYVRLLLEKNLNADQILV
VTFTKAATAELHERIRGRLAELDRAIDTDDDGGDPFIQRLFETTLAPERGIDRESALKVV
RRALRTFDQAAIHTIHAFCQRALQEAPFAAAMPFAFEMEADDAALRFEMAADFWREQVEP
VAYAHPAFAAWLVAKRAGPASLDEQLARRLKKPLAQLRWGKVDAGGNDADPQARFDTACA
IWQAERDTIVSLLGQAQDRLSKTSHKPDLVSAAIAAWTEYFAQGDCHAPPPKAALKLTAS
ALKKATKVKFEPPGHPFFEQAEALAAAVVAAEATQRARWLALIETWLDYAPAELVARKRT
RRVVSFDDLLSNLYRALAANPWLADALRTRYPAALIDEFQDTDPLQFAIFSRIFAPAGPL
FLVGDPKQAIYSFRAADLHTYLAAREAASACYTLAVNQRSTAPIVEACNRLFEANPQAFV
LDGLDYQPVRAGERRRPPFSEPDAGAGDFRIWTLPQGDAALTKRDAQRAASEACAAEIVR
LLRGAREGSVTIGDVPLAPGNIAVLVQTHKQGSLIKRVLASWGVGSVELAQASVFATLDA
EQIERVLAAVDTPGDLRRLRAALATDWLGLDAAALWRLEQVADAPAPADDPAHAADAMGW
VERFSRYRTLWHERGFALMWRTLMRELRVAQRLVAGPDGERRLTNVNHLAELVQARAATQ
PGIAPTLRWLAAQRTQGGGEDAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGALR
EPPSSGLPDAREYHDETGGAVLHYGCDDEEAERASRDAVREQAAERARLVYVALTRAVYR
CYLVAGTYLSSRSTRESRRSVLNWLVCGSGYSFDDWLTDPPDEAAVAERWRSLAGGPITL
QPLPEVGRRVPLESLQDSGARMQARANRRPLRDQWRMASFSGLIAAGSKAEEAPTPVEEV
RPDHDEIADVLAPLPLLVPQAPSYAEDDILAFPRGAAAGDCLHRMFELADFSDPQTWPEA
IRGALRERPAPAVPELAVRLPAMMHKLIADVVSTELVPGMALANLNPQRRLNELEFLFAA
PSLDFPALRELLIEYGYPDVALEPGVLRGFVKGFIDMIVEYDGRFWIVDWKSNHLGDTAA
DYAAAPLEAAMASHAYHLQALLYTVALHRYLKTRVRDYAYDTHIGGYLYLFVRGVRPQWR
DGDGAAAGVHMRRPAFELVALLDAAMIGGVA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcgccgttcatcatcacgcgctggttgcgcaggagctcgatgtcttcgcctgt
tcgctcgagggcgtcaaccagatcgaggcgtcggcgggaaccggcaagacctggaacatc
tgcgcgttgtacgtgcggctgctgcttgaaaagaatctgaacgccgaccagattctggtc
gtaacctttacgaaggcggcgaccgcggaattgcacgagcggattcgcgggcggctcgcg
gaactggaccgggctatcgatacggacgacgacggcggcgatccgtttatccagcgtctc
ttcgaaaccacgcttgcgccggagcgaggcattgatcgcgagagtgcattgaaagtcgtg
cgccgcgcgctgcgcacgttcgaccaggccgcgattcacaccattcacgccttctgtcaa
cgggccttgcaggaagcgccgttcgccgcggccatgccgttcgcgttcgaaatggaagcc
gacgacgccgcgttgcgttttgaaatggcagccgatttctggcgcgagcaggtggaaccg
gtggcctatgcgcatcccgcgttcgcggcatggctcgtggccaaacgcgccggccccgcg
tcgctcgacgagcaactcgcgcggcgcttgaagaagccgttggcgcagctacgctggggc
aaggtcgatgccggcggcaacgacgccgatccgcaggcgcgtttcgatacagcttgcgca
atctggcaggcggagcgcgacacgatcgtgagcctgcttggacaagcgcaggaccgtctg
agcaagacctcgcataagcccgatctcgtgagtgccgcgatcgcggcgtggaccgaatac
ttcgcgcagggcgattgccatgcgccgccgccgaaagcggccttgaagctgaccgcctcc
gcgttgaaaaaggccaccaaggtcaagttcgaaccgcccgggcatccgttcttcgagcag
gccgaggcactggctgcggccgtggtcgcggccgaagccacgcaacgcgcgcgctggctt
gcgcttatcgaaacctggctcgattacgcgcccgccgaactggtggcgcgcaagcgcacg
cgcagggtagtgtcgttcgacgatctgctgtccaacctgtatcgggcgctcgcggccaat
ccctggcttgccgatgctttgcgcacgcgttatccggctgcgctgatcgacgagtttcag
gatactgatccgttgcagttcgcgattttcagccgcatcttcgcgccggctgggccgctg
tttctggtcggcgatccgaaacaggcgatctacagttttcgcgcggcggatttgcatacc
tatctggcggcgcgcgaggcggcttcggcgtgctacacgctggcggtcaatcagcgttcg
accgcgccgatcgtcgaggcctgcaaccggctattcgaagcgaatccccaggctttcgtg
ctcgacggtctcgactatcaaccggtgcgggccggcgagcggcgtcgtccgcctttctcc
gaaccggatgcaggcgcgggcgacttccgcatctggaccttgccgcagggcgacgcggcg
ctgaccaaacgcgatgcgcaacgcgcggcgagtgaagcgtgtgccgccgagatcgtgcgg
ctcctgcgcggtgcgcgcgaagggtcggtaacgatcggcgacgtgccgctcgcgccgggc
aatatcgcggtgctggtgcaaacgcataaacagggcagtctgatcaagcgtgtgctggcg
tcgtggggtgtcggcagcgtggaactggcgcaggcctcggtgttcgcgacgctcgacgcc
gagcagatcgagcgcgtgctggccgcggtcgatacgccgggcgatctgcgacgtttgcgc
gccgcgcttgccaccgattggctgggtctcgacgccgccgcgctgtggcgtctcgagcag
gtcgccgacgcgccggcgcccgccgacgatcccgcgcatgccgcggacgcgatgggctgg
gtcgaacgtttctcacgctatcgcacgctatggcacgagcgcggcttcgcgttgatgtgg
cgcacgctgatgcgcgagttgcgagtcgcgcaacggctggtggccggaccggacggcgag
cgccgtctgaccaacgtgaatcatctggccgaactcgtgcaggcacgtgctgccacgcaa
cccggtatcgcaccgactttgcgctggctcgccgcgcaacgcacgcaaggtggcggcgaa
gacgcgcagttacggctcgagtcggatcgcaacctcgtgcagattgtcaccgtccacaaa
tcgaaaggactggagtacgcggttgtgttctgcccgtttctgaacgacggcgcgctgcgc
gagccgccatcctcgggcttgcccgatgcgcgcgaatatcacgacgaaacgggcggtgcc
gtgctgcactacggttgcgacgacgaagaggccgaacgcgcgtcacgtgatgcggtgcgc
gagcaggcggcagaacgggcgcggctcgtgtatgtggcgctgacacgcgcggtgtatcgc
tgctatctggtcgccgggacttacctctcctcgcgctccaccagggagtctcgccgcagc
gtactgaactggctggtgtgcggcagcggctacagctttgacgattggctcaccgatccg
cctgacgaagccgccgtggccgaacgatggcgctcgctggcaggcggcccgatcacgctg
cagccgttgccggaggtggggcgcagggtgccgttggaaagcctccaggatagcggcgcg
cgaatgcaggcgcgtgccaatcggcggccgttgcgcgaccagtggcgcatggcgagcttc
agtggcctgatcgccgccggcagcaaagccgaggaggcgcctacgccggtggaagaagtg
cggcccgatcacgacgagatcgccgatgtgctcgcacctctgccgttgctggtgccgcaa
gcgccgtcctatgcggaagacgacattctcgcttttccgcgcggcgcggcggcgggcgac
tgtctgcaccgcatgttcgaactcgcggatttcagcgatccgcagacgtggccggaggcc
atccggggcgcattgcgcgagcgcccggcgccggctgtgccggaactcgcggtacgtttg
cctgccatgatgcacaagctgatcgcggacgtcgtgagcaccgagctcgtgcccggtatg
gcgcttgccaacttgaatccgcagcggcgtctgaacgaacttgaatttctgtttgccgcg
ccttcgctcgattttccggcgttgcgcgaactgctgatcgaatacggctatcccgatgtg
gcgctggaacccggcgtgttgcgcggtttcgtcaaaggatttatcgacatgatcgtcgag
tacgacggacgtttctggatcgtcgactggaaatcgaaccatctgggcgacacggccgcc
gactacgccgcggcgccgcttgaagcggccatggcgagccacgcgtatcacctgcaggcg
ctgctctacacggtggcgctgcatcgctatctgaaaacgcgggtgcgcgattacgcctac
gacacgcatatcggcggctatctctatctgttcgtgcgcggcgttcgtccgcagtggcgc
gacggcgacggggcggcagcgggcgtgcatatgcggcgccccgcgttcgaactggtggcg
ctgctcgacgcggcgatgatcggaggtgtcgcatga
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