Paraburkholderia fungorum: OI25_508
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Entry
OI25_508 CDS
T03799
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03030
DNA replication
bfn03430
Mismatch repair
bfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OI25_508 (dnaE)
03430 Mismatch repair
OI25_508 (dnaE)
03440 Homologous recombination
OI25_508 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfn03032
]
OI25_508 (dnaE)
03400 DNA repair and recombination proteins [BR:
bfn03400
]
OI25_508 (dnaE)
Enzymes [BR:
bfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OI25_508 (dnaE)
DNA replication proteins [BR:
bfn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OI25_508 (dnaE)
DNA repair and recombination proteins [BR:
bfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OI25_508 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
GRP
Motif
Other DBs
NCBI-ProteinID:
AJZ58533
UniProt:
A0AAU8SWG6
LinkDB
All DBs
Position
1:complement(577755..581327)
Genome browser
AA seq
1190 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAKDGQGALALTDLGNAFGLVRFYKEARGK
GVKPIAGCDVWITNPDDRDKPSRLLLLVKNRRGYLNLCELLSKASLTNQYRGRAEIEAGW
LESGLGEGLLALSGAQQGDIGLALAAGNEEAAKRNALHWAKVFPGGFYIELQRCGQPGGE
QYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRSKRFTSEQY
FRTQEEMAKLFADIPSALANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLEQLYPDTAEREAQRETYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KDKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIADAMK
EEPLLQERFDNEDEVRQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDESG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDAASFS
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHGREV
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQHRE
LFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMSLAMDDTDKVKILFEDCLANKMAVLPPDVNLSAYRFEPVAEPDGKRSKTIRYGLGAIK
GSGQNAIEEILRAREEGPFIDIFDFCNRVDRRIVNRRTVEALIRAGAFDTLHANRAQLIA
SVSLAMEAAEQASANAMQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYLSGH
LFDAYKDEVRRFVRQKIGELKEGRDKLVAGVIASLRTQMTQRGKMLIALLDDGTGQCEVT
VFNETFEANKPLFKEDELLVVQGSARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKVQMN
GNADASALRRVLEAHSAGKDEPQAAPAPAASSRGGNGNGGGGGRNGGGYGGGGQRQAVQI
PNGLAVQVVYRSENAQGEMRLGDAWRVKPTDELLAALRGEFAGSSIEIVY
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgcttcgttcatctccgcgtccactccgaattctcgattgccgacggc
atcgtgcgccttgacgacatcgtcaaggctgccgccaaagacggtcagggtgcgctcgcc
cttaccgacctcggcaacgcgttcggcctcgtccgtttttacaaggaagcccgtggcaaa
ggggtcaaacccattgccggctgcgacgtctggatcaccaatccggacgaccgcgacaag
ccttcgcgtttgctgctgctggtcaagaaccggcgcggctatctgaatctgtgcgaactg
ctcagcaaggcatcgctcaccaaccagtatcgcggccgcgctgaaatcgaggccggctgg
ctcgaatccggtctgggtgaaggcctgctggcgctgtcgggtgctcaacagggcgacatc
ggcctcgcgctcgcggccggcaacgaagaagcggccaaacgcaacgcgttgcattgggcg
aaggtgtttccgggcggcttctatatcgaactgcaacggtgtggtcagcccggcggcgag
caatacgtacaacaggcggtggcgctcgcggcgtcgttgaaattgccggtggtggccact
caccccatgcagttcatgacgccggacgatttcaccgcgcacgaagcgcgcgtgtgtatt
tccgaaggcgacattctggcgaatccgcgccgctcgaagcgctttacgtccgaacagtat
ttccgcacgcaggaagagatggcgaagctgttcgcggacattccgtcggcgctcgccaat
agtgtggaaattgccaagcgttgcaacctgacgctcgaactcggcaagccgaagctgccg
ctcttcccgacgcccgacggcatgtcgcttgacgactacctcgtgcagttgtcgaaagag
ggcctcgaaaagcgtctcgaacagttgtacccggatacggccgagcgcgaagcgcagcgc
gaaacgtattaccagcgcctcgaattcgagtgcggcacgatcatcaagatgggcttcccg
ggctacttcctgatcgttgcggactttatcaactgggccaagaacaacggcgtgccggtc
ggaccgggccggggttcgggcgcaggttcgctggttgcgtacgcgctcggcgtgaccgac
ctcgatccgctccgctacaacctgctgttcgaacgtttcctgaatccggaacgggtctcg
atgcccgacttcgacatcgacttctgtcagcacggccgcgaccgtgtgattcagtacgtg
aaagacaaatacggcgcggacgcggtatcgcagatcgccaccttcggcacgatggcggcg
aaggcggcggtgcgggatatcggccgcgtgctcgatcttggttatatgttcacggacggg
atcgccaagctgattccgttcaagccgggcaaacacgtcaccatcgctgatgcgatgaag
gaagagccgctgctgcaggagcgcttcgacaacgaagacgaagtgcgtcagttgctcgag
ctcgcccagcgcgtggaaggtctcacgcgcaacgtcggcatgcacgcgggcggcgtgttg
atcgcgcccggcaagctcacggatttctgtccgctctatacgcagggcgacgaaagcggc
gtcgtgagccagtacgacaaagacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ttgggcctcaccacgctgaccattctggattgggccgagcgttatatccgccgtctcgat
ccttcgaagaaagactggtcgctcgcgcaggtgccgctcgacgacgctgcgtcgttctcg
atcctgaagaaagcgaacacggtcgccgtgttccagctggaaagccgcggcatgcagggc
atgctgaaagacgcgcagcctgaccgcttcgaggacatcatcgcgctcgtcgcgttgtac
cgtcccggcccgatggacctgatcccgagcttctgcgcgcgtaagcacggccgcgaagtg
gtggagtatccggacccgcgtgtggaacctgttctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgccgcgcgatgggtaagaagaaggccgaggaaatggcccagcaccgcgag
ctgttccgtcagggcgccgcgaaaaacgggctgaccggcgagaaagcggacgaaatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggcggcgtatgcg
ctgctcgcgtactacacggcgtggctgaaggcgcaccatccggccgaattcatggcggcg
aatatgtcgctcgccatggacgacacggacaaggtcaagatcctgttcgaggattgcctc
gcgaacaagatggctgtgctgccgccggacgtcaacctgtcggcgtaccgtttcgagccg
gtcgcggagccggacggcaagcgctcgaaaacgatccgctatggtctcggcgcgatcaag
ggcagcggccagaatgcgatcgaggaaatcctgcgtgcacgcgaagaaggtccgtttatc
gacatcttcgacttctgcaaccgggtcgaccgccggatcgtcaatcgccggacggtggaa
gccttgatccgcgccggtgcgttcgacacgctgcacgccaatcgcgcgcagctgatcgcc
tcggtctcgctggccatggaggcggccgaacaggctagcgccaacgcaatgcaagccggc
ctgttcgacatgggcgatgcgccgtcgcaagggcatgaactggtcgacgagccggaatgg
ccggaaaagaagaagctgcaggaagagaaggccgcgctcggcttctacctgtcgggccat
ctgttcgatgcctacaaggacgaagtgcgtcgcttcgtgcgtcagaagatcggcgaattg
aaggaagggagggacaagctggtcgccggtgtgatcgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgttgctcgacgacggcacgggccaatgcgaagtgacc
gtcttcaatgagacttttgaggcgaataagccgttattcaaggaagacgagttgctggtg
gtgcaaggctcggcgcgtaacgacgcgttcacgggcggcatccgtttcacggtcgatacg
gtgatggacctcggtcgcgcccgctgtcgttatgcggaagccgtgaaggtgcagatgaac
ggcaatgcggacgcatcggcattgcggcgcgtgctcgaagcacatagcgcgggcaaggac
gagccgcaagctgcgccggcgccggcggcctcgtcgcgcggcggcaacggtaacggaggc
ggtggcgggcgcaacggcggaggctatggtggcggtggccaacgccaggccgtgcagatc
ccgaacgggctcgcagtgcaggtggtttatcgcagcgagaatgcgcaaggtgaaatgcgt
ctgggcgacgcatggcgcgtaaagcccaccgacgaactgctcgcggccttgcgtggcgag
ttcgcaggaagctcgatcgagattgtttattga
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