Paraburkholderia fungorum: OI25_511
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Entry
OI25_511 CDS
T03799
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI25_511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfn03019
]
OI25_511
Enzymes [BR:
bfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OI25_511
Messenger RNA biogenesis [BR:
bfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OI25_511
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Fe-ADH
RPC3_helical
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AJZ57269
UniProt:
A0AAJ3VWN8
LinkDB
All DBs
Position
1:complement(584217..585707)
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AA seq
496 aa
AA seq
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MSDTAVTPSTATFDQFGLAPDILKAVKESGYTIPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAV
VFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRDPQTIEVARSNSTATNVTQIVYEVA
EGDKTAAVVKLIRDRGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRSQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRPLDVQRLVVDAPVRHHHEERAPRRERVDGRAEGREERGGRRR
PGASSSGAFDRPHHHRAQPVDDFFLKPYEPSAASLRKGEEAAASASTAAPQKASSKQPLA
ALLGGFGMPRKSSSSS
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcacgcccagcactgcgacttttgatcaattcggtctcgcgccc
gacattctgaaagccgtcaaggaatcgggctacaccattcctacgccgatccaggcgcag
gcgattcctgtcgtgctggccggtcgtgacgtcatgggcgccgcccagaccggtacgggc
aaaacggccagcttctcgctgccgatcatccagcgcttgctgccgcaggccagcacgagc
gcatcgcctgcccgccatccggtgcgcgcgctgatcctgacgcccactcgcgaactggcc
gaccaggtggcggcgaacgtgcagtcgtacgcgaagcacacggcgctgcgcagcgccgtg
gtgttcggcggggtcgacatgaatccgcaatccgagcagctgcgccgcggggtcgaaatt
ctgatcgccacgccgggccgtctgctcgaccacgtgcaacagaaaaccgccaatctcggc
caggtgcagattctcgtgctcgacgaagccgaccggatgctcgatatgggcttcctgccg
gatttgcagcgcatcctgaacctgctgccgaaggaacgtcagacgctgctgttttcggcc
acgttctcgggcgaaatcaagaaacttgccgctacctatctgcgcgacccgcagacgatc
gaagtcgcgcgtagcaattcgaccgcgaccaatgtgacgcagatcgtttatgaggttgcc
gaaggcgacaagactgctgctgtcgtcaagctgattcgtgaccgcggcctcaagcaggtg
atcgtgttctgtaacagcaagatcggcgcgagccgcctcgcgcggagtctggagcgtgac
ggtgtggttgccacggcgattcacggtgaccgttcgcagaatgagcggatgcaggcactg
gatgcattcaagcgtggcgagatcgaggcgttggtggcgacggatgttgctgcgcgcggg
ttggatattgccgagctgcctgctgtgattaatttcgatctgccgttcaatgcggaagat
tatgtgcaccggattgggcgcacggggcgtgctggggcttcgggtgatgctttgtcgttg
tgcagcccgaatgagcgcaagcagcttgccgatatcgagaagctgatcaagcggcctttg
gatgtgcaacgtttggtcgtggatgcgccggtgcggcatcaccatgaagagcgtgcgccg
cggcgtgaacgcgtcgatggccgcgcagagggccgcgaggagcggggtggtcgccggcgt
cccggcgcttcgtcttcgggggcgttcgatcggccgcatcatcatcgggcacagcctgtc
gatgactttttcctcaagccttatgagccttcggcggcttctttgaggaaaggggaggag
gctgctgcttctgcctctacggctgctccgcagaaggcttcttctaaacagccgttggct
gcgttgctgggtgggtttgggatgccgaggaagtcgtcttcgtcttcctaa
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