Paraburkholderia fungorum: OI25_5148
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Entry
OI25_5148 CDS
T03799
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OI25_5148 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfn03021
]
OI25_5148 (rpoD)
Transcription machinery [BR:
bfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OI25_5148 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AJZ61869
UniProt:
A0AAP5QD34
LinkDB
All DBs
Position
2:1307453..1309450
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AA seq
665 aa
AA seq
DB search
MNPFDREDSQHETAGYTPKAPAGRTAKGKGAGKAIPVAAELPPQQAEERQRQMRALIQLG
KEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFNDMGVQVYEQAPDAETLLLNSNAPAVVS
DDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAKRIEDGLHEMVQ
AIAACPLAISAILASAQQVADGELRIDELVDGLNEDTAAAEDTTADAAADVDADATDDVD
SDEEEDDDAGPADSSAADEARLKQLTSDCLEIFAQVGILSDQMNASHTRGDVSSKAYLRA
REEIQQHLAKIRFTARTIDRLCGDVQSQVAQVRAIERNIMQIVVTKSGMPREQFIESFKG
HEADLGWTERAARGSSSFGAALERHLPAIQSEQQKLIDIEATVSLPLKHLKEINRQMVAA
ESKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFS
TYATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERME
LSEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRAAIDDAL
DSLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADRLK
SFLDR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccttttgatcgcgaagattcgcaacacgaaactgccggatacaccccaaaagcg
cccgctggccgtacagccaagggcaaaggcgctggtaaagcgatccccgtagcggccgaa
ctgccgccgcaacaggctgaagagcgtcagcgccagatgcgcgcactgatccagctgggc
aaggagcaaggctacctgacccacgcgcagatcaacgaccacctgcccgacaacttcgcg
caaacggccgcgatcgacagcatcgtcagcgccttcaacgacatgggcgtgcaggtctac
gagcaggctccggatgcggaaacgctgctgctcaactcgaacgcccccgccgtggtgtcg
gacgatcaggcagatgaggaaaccgaagtcgcgttgtcgaccgtcgattccgagttcggc
cgtacgaccgaccccgtgcgcatgtatatgcgcgaaatgggcgcaaccgagctgctgacc
cgcgcgggcgaaatcgcgattgcgaagcgcattgaagacggtctgcacgaaatggtgcag
gcgattgccgcttgcccgctcgcgatctccgccattctggcgagcgcccaacaggtcgcg
gacggcgaactgcggatcgacgaactggtcgacggtctgaatgaagacaccgccgctgcg
gaagacaccactgcggacgccgcagcggacgtcgacgccgatgcgaccgacgatgtcgac
agcgatgaagaagaagacgacgacgccggcccggccgactcctcggcagcagacgaagca
cgtctgaagcaactcacgagcgattgcctcgagatcttcgcccaggtcggcatcctgtcc
gatcagatgaacgcctcgcacacgcgcggcgacgtcagctcgaaggcttacctgcgcgcc
cgcgaagagatccagcagcacctcgcgaagattcgctttacggctcgcacgatcgaccgc
ctgtgcggcgacgtgcaaagccaggtcgcccaggttcgcgcgatcgaacgcaacatcatg
caaatcgtcgtgacgaagagcggcatgccgcgcgagcagttcatcgaatcgttcaagggt
cacgaagccgatctcggctggaccgagcgtgccgcacgcggctcgtcgtcgttcggtgcg
gcgctggagcgtcatctgccggccatccagtcggaacagcaaaagctgatcgacatcgag
gcaaccgtttcgctgccgctcaagcatctgaaagagatcaaccgtcagatggttgcggcc
gagtcgaagatgcgcaaggccaagagcgagatgatcgaggcgaatctgcgtctcgtgatc
tcgatcgcaaagaagtacgtcaaccgcggcatgctgttccttgatctgatccaggaaggc
aacatcggtttgatgaaggccgtggacaagttcgaataccgccgtggctggaagttctcg
acgtatgccacctggtgggttcgtcaggccgtgacgcgttcactcgccgatcaggctcgc
acgatccgcgtgccggtgcacatgatcgaaacgatcaacaagctcaaccgcatttcgcgc
gagatcctgcaacagaccggccaggaagcccatccttcggtgctggcggagcgcatggaa
ctgtcggaagagaaagtacgcggcattctgaagatcgccaagcagccggtatcgatggaa
acgccggtgggtgacgacggcgacgccacgctcggcgacatgatcgaagattcggctgca
tcttcgccggctgacgcagcgatgcaggccgacttgcgcgccgccatcgacgatgcgctc
gactcgctgtcgccgcgcgaagcgaaggtgctacgcatgcgctacggcatcaacacgaag
tcggaccacacgctcgaagaagtcggcaagcagttcgacgtcacgcgcgagcggattcgc
cagatcgaaagcaaggccatgcgtaagctgatgcatccgagccgcgcagatcgcctgaag
tcgttcctcgaccgttaa
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