KEGG   Paraburkholderia fungorum: OI25_6918
Entry
OI25_6918         CDS       T03799                                 
Name
(GenBank) DEAD/H associated family protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bfn  Paraburkholderia fungorum
Brite
KEGG Orthology (KO) [BR:bfn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bfn03400]
    OI25_6918
Enzymes [BR:bfn01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     OI25_6918
    5.6.2.6  RNA 3'-5' helicase
     OI25_6918
DNA repair and recombination proteins [BR:bfn03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    OI25_6918
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD WHD_4th_Lhr WHD_3rd_Lhr Helicase_C Cas3-like_C_2 ResIII WHD_DprA TrmB GntR Fe_dep_repress HTH_IclR AAA_22 MarR_2 LexA_DNA_bind DUF5805 MarR PhoH
Other DBs
NCBI-ProteinID: AJZ62255
UniProt: A0AAU8TMI6
LinkDB
Position
2:complement(3287860..3292380)
AA seq 1506 aa
MARRAPIYVSMTSASTSATALRAHPDSASFDPASRTAPDAAARPASGLSTATVLDDFHPA
VAGWFLKTFPAPTDAQAAAWPQIRSGRSTLVAAPTGSGKTLTAFLSALDELVQQGLANSG
VLPDETLVVYVSPLKALSNDIRINLEVPLQGIAAELDARGLAPLEIRTAVRTGDTTQQER
NALKKRAPHILVTTPESLYVLLGSDSGRRMLSTVRTVIVDEIHALAGSKRGSHLALSLER
LDALCERRLPRIGLSATQKPVSAVARFLVGGASIESPTPADCAIVDVGHIRERDLALEIP
PVPLEAVMPNEVWERVYDRLAELIAMHRTTLIFVNTRRMAERAARHLSERLGKDAVAAHH
GSLAKEHRFDAEQRLKRGDLRVLIATASLELGIDIGDVDLVCQMGSPRAIAPFLQRVGRS
GHHVGGMPKGRLFPASRDELIECAALLDCVRRGELDALRIPRAPLDVLAQQIVAEVSSNE
LSEDALFDMVRRAAPYAELEREQYNAVLRMLAEGYTSRNGPRGAYIHRDVVSGTLRGRRG
GKLVAVTSGGTIPENADYAVVLEPQAINIGTVNEDFAVESLAGDVFQLGNASYRILRIES
GRVRVEDAQGQPPNIPFWLGEAPGRSDELSFGVARLREEIERRLAGNADDAGIDTDSMPE
RLQHAIDWLVETLGLDEAAARQIVDYLARARAALSVLPTQNTLVMERFFDESGGTQLVIH
TPFGSRVNRAWGLALRKRFCRTFNFELQAAATEDAIVLSLTGSHSFVLDDVWRYLHSNSA
EHLLIQALLDAPLFGVRWRWNATTSLGLPRYTGGRKTPPQLQRMRSEDLLASVFPEQAAC
LENVVGERELPRHPLVDQTVDDCLHEAMDSDRWLALLRRIEQGDVQLIARDLPAPSPLAA
EILNAKPYAYLDDAPIEERRTQAVLNRRWTDPASADDLGALDADAIDSVRGEAWPQARTA
DEMHEALTGLACITGTEAGHNEGWPAWLASLAESGRATRLRFGGDDVLWLPVERLTCFQA
LYPDAPFEPPLTAPKGFTETWSADDALLDVLRARLTGFGPLPVQAIAQALRLPAASVEQT
LLRLEAEGYVMRGRFSPGASEEEWCERHLLARIHRYTVKRLRREIEPVERHDFMRFLFEW
QHLTPDTRSEGREALAAVLEQMEGFQAAAGAWEEDILPARVKAYANTSLDELCRAGKIVW
TRLTERARGAAGPVRSTPIVLLPRAQVRVWSALIDPSKQPELSARAQLVYDTLAQHGAMF
FDELLTEVSGLRMELENALGELVAAGLVNSDSFAGLRALLKPAAKRSTYSSSRRVRSGAF
IGGMDDAGRWALVNRQTVAAAPETSPARRQQFAPETLEHIAMTLLRRYGVVFWRLLEREA
EWLPPWRDLLRVFQRLEARGVVRGGRFINGLAGEQFALPEAIPLLREVRRHANDGAFVCV
AATDPLNLAGTLLVGERVPAVAGNRILYRDGVVIATLIAGAFWFAPDVETIPAEREHARS
LLARRF
NT seq 4521 nt   +upstreamnt  +downstreamnt
atggcacgccgcgcccccatctatgtcagcatgacttcggcctcgacatccgcgaccgcc
ttgcgcgcgcaccctgattccgccagcttcgatccggcctcgcggacggcgccggacgcc
gctgcgcgtcccgcctccggcctttcaacggccactgtgctcgatgacttccatcccgcg
gtcgccggctggttcctgaagaccttcccggcgcccactgacgcgcaggcggccgcctgg
ccgcagattcgcagcggccgctcaacgctcgtcgccgcgcccaccggttcgggcaaaacc
ctcaccgcctttctgtccgcgctcgacgaactggttcagcaaggcctcgccaacagcggt
gtcctgcccgacgaaaccctggtggtctacgtctcgccgctcaaagcactttccaacgac
atccgcatcaatctggaagtgccgttgcagggcatcgctgcggaactcgacgcgcgcggc
ttagcgccgctcgaaattcgcaccgccgtgcgcaccggcgacactacgcaacaggagcgc
aacgcgctgaaaaagcgcgcgccgcatattctcgtaaccacgccagaatcgctctacgtc
ctgctcggttcggattccggccggcgcatgctgtcgacggtgcgcacggtgatcgtcgac
gaaattcatgcgctcgccggcagcaagcgcggcagccatctggcgctcagcctcgagcgg
ctcgacgcgctgtgcgagcggcgcttgccgcggatcggactgtcggccacgcaaaaaccg
gtcagcgccgttgcgcgcttcctggtgggcggcgcgagtatcgaaagccccactcccgcg
gattgcgcgatcgtcgacgtggggcacatccgcgagcgcgacctcgcgctcgagattccg
cccgtgccgctcgaagcggtgatgcctaacgaagtgtgggagcgcgtctacgaccggctc
gccgaattgatcgcaatgcatcgcaccacgctcattttcgtcaacacgcgccgtatggcc
gaacgcgccgcgcgtcatctgagcgagcgcctcggtaaggacgcggtcgcagcacaccac
ggcagcctcgcgaaggaacaccgtttcgacgccgagcagcgcctaaaacgcggcgactta
cgggtgctgatcgccaccgcctccctggaactgggcatcgatatcggcgacgtggatctg
gtctgccagatgggttcgccacgcgcgatcgcgccattcctgcagcgcgtggggcgctcg
ggccaccacgtcggcggcatgccgaaaggccggctgtttccggcctcgcgcgacgaattg
atcgaatgcgcggcgctgctcgattgcgtgcggcgtggcgaactcgatgcactgcggatc
ccgcgcgcgccgctcgatgtgctcgcccaacagatcgtggccgaggtgtcgagcaacgaa
ctgagcgaagacgcgttgttcgacatggtgcgacgcgcggccccctacgccgaactcgaa
cgcgagcaatacaacgccgtgctgcgcatgctcgcggagggctacacgagccgcaatggc
ccgcgcggcgcctatattcaccgcgacgtagtgagcggcacgctgcgcggccggcgcggc
ggaaaactggtcgccgtgacctcgggcggcacgattcccgagaacgccgactatgcggtg
gtgctcgagccgcaggcgatcaatatcggcaccgtcaacgaggatttcgcggtcgagagt
ctcgccggcgatgtgttccagctcggcaacgcgtcatatcgcattttgcggatcgagagc
ggccgcgtgcgagtcgaggacgcgcaagggcagccgccgaatattccgttctggctgggt
gaagcgccggggcgcagcgatgaactgtcattcggcgtggcgcgcctgcgcgaagagatc
gagcgtcggcttgccgggaacgcggacgatgccggtatcgataccgattccatgcctgaa
cgcctgcagcatgcaatcgactggctcgtcgaaaccctcggtctcgatgaagccgccgcc
cgtcagattgtcgactacctcgctcgtgcacgtgccgccctcagcgtgctgccgacgcaa
aacacgctggtcatggagcgctttttcgacgaatcaggcggtacgcaactcgtgatccac
acgccgttcggcagccgcgtgaatcgcgcgtgggggctcgccttgcgcaagcgtttttgc
cggaccttcaacttcgaactgcaagccgccgccaccgaagacgcgatcgtcctctcactc
accggcagccattcgttcgtactcgacgacgtatggcgctatctgcattcgaacagcgcc
gagcatctgctgatccaggcgctgctcgacgcgccgctgtttggcgtgcgctggcgctgg
aacgcgaccacctcgctcggcctgccgcgctataccggcgggcgcaagacgcctccgcaa
ttgcagcgcatgcgtagcgaagatctgctggcaagcgtgtttccggagcaagctgcgtgc
ctggagaacgttgtcggcgagcgtgaactcccgcgccatccgttagtggaccaaaccgtc
gacgactgcctgcatgaggcgatggatagcgaccggtggctcgctttgctgcgtcgcatc
gaacagggcgacgtgcagttgatcgcccgcgatctgccggcgccctcgccgcttgccgcc
gaaatcctcaacgcaaaaccgtatgcctatctcgacgacgcaccaatcgaagagcgtcgc
acgcaagcggtactgaaccggcgctggaccgatccggccagcgccgacgaccttggcgcc
ctggacgccgacgcgatcgacagcgtacgcggcgaagcatggccgcaggcacgcaccgcc
gacgagatgcacgaagcgctaacgggcctcgcgtgcatcaccggaaccgaagcgggtcac
aacgaaggctggccggcgtggctcgcgtcgcttgccgaatccggccgcgcgacccgcctg
cggttcggcggcgacgacgtgctgtggctacccgtcgagcgcctgacctgtttccaggcg
ctctatccggacgcgccgttcgaaccgccgctcaccgccccgaagggcttcaccgagacc
tggagcgccgacgacgccctgctcgacgtgttgcgcgcgcggctgaccggttttggcccg
ctgcctgtgcaggcgattgcgcaagcgctgcgcttgccggcggcatccgtcgaacagacc
ttgctgcgcctcgaagcggaaggctacgtgatgcgtggccgcttctcgccgggcgcaagc
gaggaagaatggtgcgaacgccatttgctggcgcggatacaccgctataccgtgaagcgc
ttgcgccgcgagatcgagcccgtggaacggcacgacttcatgcgctttctattcgagtgg
cagcatctgacgccggacacccgcagtgaaggacgtgaagcgttggccgccgtgcttgaa
cagatggagggttttcaggcggctgcgggcgcatgggaagaagacattctgccggcacgc
gtgaaggcgtacgcaaatacttcgctggacgaactatgccgggccggcaagatcgtctgg
acccgtctgaccgaacgggcacgcggcgcggcggggccggtgcgcagcacgccgatcgtg
ttgctgccgcgcgctcaggtgcgtgtctggagcgcgctgatcgatccgtcaaagcagccg
gagctatcggcgcgggcgcagctcgtttatgacacgttagcgcagcacggcgcgatgttc
ttcgacgaattgctcactgaagtaagcggcttgcggatggaactggagaacgcattgggc
gaactggtcgcagcaggcctcgtgaattccgatagtttcgctggcttgcgcgcgctactc
aaacctgccgccaaacgcagtacgtattcgagcagccgccgtgtcaggtcgggtgcattc
atcggaggaatggacgacgcgggacgctgggcgctcgtcaatcggcaaaccgttgccgcc
gcgccggaaacttcgcccgcgcgtcgccagcagttcgcgcccgagacactcgaacacatc
gcgatgacgctgctgcgccgctatggcgtggtgttctggcgtttgctcgaacgcgaggcc
gagtggttgccgccgtggcgcgatctgttgcgtgttttccaacggctcgaagcgcgcggc
gtggttcgcggcggccgatttatcaatgggctcgccggcgaacagttcgcattaccggaa
gcgattccattgttgcgggaagttcggcgacatgcgaacgacggtgcatttgtgtgcgtt
gccgcaaccgatcctttaaatctcgcgggcactttactggtcggcgaacgggtgcctgct
gtcgccggaaatcggattctgtatcgcgatggtgttgttatcgcgacactaattgcgggg
gcattctggtttgcccctgacgtggaaacgattcccgccgaacgggagcacgcacgaagc
ctgctggcgcggcgattctaa

DBGET integrated database retrieval system