Paraburkholderia fungorum: OI25_6940
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Entry
OI25_6940 CDS
T03799
Name
(GenBank) DEAD_2 family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OI25_6940
09124 Replication and repair
03420 Nucleotide excision repair
OI25_6940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfn03021
]
OI25_6940
03400 DNA repair and recombination proteins [BR:
bfn03400
]
OI25_6940
Enzymes [BR:
bfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
OI25_6940
Transcription machinery [BR:
bfn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OI25_6940
DNA repair and recombination proteins [BR:
bfn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OI25_6940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJZ63379
LinkDB
All DBs
Position
2:3315398..3317674
Genome browser
AA seq
758 aa
AA seq
DB search
MTYVVAVRAMCEFTARRGDLDLRFTPAPTSLEGMAGHVTVVGRRAGGYETEITLSGTHRG
LTVRGRADGYDPVSNRLEEVKTYRGALERMPANHRTLHWAQALVYGHLLCRARGLAELTV
ALVYFDIGTQKETSLAETHSARELEIFFVEQCECFLDWAVQEEAHRAARNTALSALQFPH
GTFRSGQRELAVSVYRAARDGTPLMAQAPTGIGKTLATIFPLLKACASDQIDRVFFLTAK
TPGRALALDAIETLHRSAAPSASRLPLRTLELVARDKACEHPDKACNGESCPLARGFYDR
LDAARSAALAGPKLDRMSVREAALAHEVCPYYLAQELARWSDVVVGDYNYYYDSSAMLYA
LTQINQWRVGVLVDEAHNLLERARRMYSASLDQAAFRLARKTAPATLKRPLERLQREWNA
VKRAQTGTYQVYAEVPGKLLAAAQNLIGAVTDQLAEAPLSIDEASLRFFFDAMHFVALAE
QFGEHSIFDITLSTDRYAPRDKTNATLCVRNVIPAPFLAGRYAAARTTVMFSGTLNPHHF
YRDTLGLPEQTNWLEVEGPFRAEQLQVRVAGNVSTRWRDRERSLVPIVELIAKQYAAQPG
NYLGFLSSFEYLQQVVGLMRERHPDLPVWAQEPGMDEAARDAFLARFRTMGQGVGFAVLG
GAFSEGVDLVGQQLIGAFIATLGLPQMNDVNEQMRRTMDAKFGNGYDYMYLYPGLQKVVQ
AAGRVIRTEQDQGVVHLIDDRYRRPEVRRLLPRWWQVQ
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgacctacgtggtcgccgtacgggcgatgtgcgaatttaccgcaaggcgcggcgacctg
gatctgcgcttcacgcccgctcccacctcgctggagggcatggcgggccacgtgacggtg
gtcgggcggcgcgcgggcggctatgaaaccgagatcacgctaagcggcacgcatcgtggc
ctgaccgtgcgtggccgcgccgacggctacgatccggtgtcgaaccggctggaagaggtc
aagacctatcgcggcgcgctcgaacggatgcccgccaatcaccgcaccctgcattgggcg
caggcgctggtgtacggccatctgctatgccgtgcccgcgggctcgccgaattgacggtc
gcgctggtgtacttcgatatcggcacccagaaggaaacgtcgctggccgaaacacacagt
gcacgcgagttggagatttttttcgtcgagcaatgcgagtgttttctcgattgggccgtg
caggaagaggcccatcgcgcggcgcgcaatactgcgctcagcgccttgcagtttccgcac
ggcacgttccgtagcgggcagcgcgaactcgcggtgtcggtgtatcgtgccgcgcgagac
ggcacgccgttgatggcgcaagcgccgaccggcatcggcaagaccctggcgacgattttt
ccgctgctcaaggcgtgcgcgtcggaccagatcgaccgcgtgttcttcctcaccgcgaag
acgccgggccgcgcgcttgccctcgatgcgattgaaacgctgcatcggagcgccgcgccg
tccgcaagccggttgccgctcagaacgctggaactggtcgcgcgcgacaaagcctgtgag
catcccgacaaagcctgcaatggcgagtcctgtccgctcgcgcgcggcttctacgaccgg
ctcgatgcagcccgcagcgcggcgttggccgggccgaagctcgaccgcatgtcggtgcgc
gaagcggcgctcgcgcacgaggtctgcccgtactatctggcgcaggaactggcacgctgg
tccgacgtggtggtcggcgattacaactactactacgacagcagtgcgatgctgtacgcg
ctcacgcagattaatcagtggcgcgtcggcgtgctggtggacgaggcgcacaatctgctc
gagcgggcgcgccgcatgtacagcgcgtcgctcgaccaggcggcgttccggctcgcccgc
aaaaccgcaccggcaaccctgaagaggccgcttgaacggcttcagcgcgaatggaacgcc
gtcaaacgcgcgcagaccggcacctatcaggtctacgccgaggtacccggcaaactgctt
gcggcggcacaaaacctgatcggcgcagtgacggaccagttggccgaagcgccgctttct
atcgacgaggcgtcattgcggttcttcttcgacgccatgcatttcgtcgcgctggcggag
cagtttggcgagcattcgattttcgacatcacgctcagcacggatcgttacgcgccgcgc
gacaagaccaacgccacgctgtgcgtgcgcaacgtgatccccgcaccgtttctcgccggg
cgctacgctgccgcgcgcaccacggtgatgttttccggcacgctcaatccgcatcatttc
tatcgcgacacgctgggtctgcctgagcagaccaactggctcgaggtcgaagggccgttt
cgcgccgagcagttgcaggtgcgcgtggcgggcaatgtatcgacgcgctggcgcgaccgc
gagcgttcgctcgtgcccatcgtcgagctgatcgcgaagcagtacgccgcgcagccgggc
aactatctcgggtttctgagcagcttcgagtatctgcagcaggtggtggggttgatgcgc
gagcgtcatccggacctgccggtatgggcgcaggaaccgggtatggacgaggcagcgcgc
gatgcgttcctcgcgcgctttcgcaccatggggcagggtgtcggctttgcagtgttaggc
ggcgcgttttccgagggcgtcgatctggtcgggcagcagttgatcggcgccttcatcgcg
acgctcggtctgccgcaaatgaacgacgtcaacgagcagatgcgccgcacgatggacgcg
aagttcggcaatggctacgactacatgtatctgtatccgggtttgcagaaggtcgtgcaa
gccgcgggacgggtgatccggaccgagcaggatcagggcgtggtgcatctgatcgacgac
cgctaccggcggccggaagtgcgccggctgttgccgcgctggtggcaggtgcaatag
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