Paraburkholderia fungorum: OI25_955
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Entry
OI25_955 CDS
T03799
Symbol
pcnB
Name
(GenBank) poly(A) polymerase family protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
bfn
Paraburkholderia fungorum
Pathway
bfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OI25_955 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfn03019
]
OI25_955 (pcnB)
Enzymes [BR:
bfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
OI25_955 (pcnB)
Messenger RNA biogenesis [BR:
bfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OI25_955 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
AJZ60420
UniProt:
A0AAU8T2D2
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All DBs
Position
1:1085787..1087367
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AA seq
526 aa
AA seq
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MIKKLIRKLFGQDSAPADNASPAADEADEAGESPARNTSGAGKTRRKPARPAVKTVRDPD
VPVIIPHDVHGIDQSLISRNAIRVTEGLQEAGHRAFIVGGAVRDLLLGIKPKDFDVATDA
TPEQVQKLFRRARIIGRRFQIVHVQFGQEIIETSTFRALVDPPAADAAPPRRLKRDELDR
RTHAVDASGRVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHNGMADMRARLLRM
IGDPATRYREDPVRMLRVVRFAAKLDFEIEDTTRAPIVKMADLINNVPAARLFDEMLKLM
LSGHALACLKRLRQEGLHHGLLPLLDVVLEQPIGEKFITLALSNTDARVRAGKPVSPGFL
FATLLWHDVQTRWQQFEANGEYPVPALHRAMDEVLDMQTEKLAIHKRFSSDMREIWGLQL
RLEKRSGRSALKLLEHQRFRAGYDFLLLRCESGELDESVGAWWTEFIEGDVAARETLLTQ
GGKDRSPRKRRRRSSGARTRKPGDGMEGGSPERAANEAGHDSSHDD
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
gtgatcaaaaaacttatccgcaagctattcggccaggactcggcgcccgctgacaacgcc
tcgcccgccgcagacgaagcagacgaagccggtgaatcgccggcacgcaatacatccggc
gccggcaaaacgcgccgcaaaccggcgcgccccgccgtcaaaaccgtgcgggaccccgac
gtgccggtcatcattccgcacgacgtgcacggcatcgatcagtcgctgatctcacggaac
gcgattcgcgttaccgagggcctgcaggaagcggggcatcgcgcgtttatcgtcggcggt
gcggtgcgcgatctgctgctcggcatcaagccgaaagacttcgacgtcgcgaccgacgcc
acgcccgaacaggtccagaaactgttccgtcgcgcccgcatcatcggccgccggttccag
atcgtgcacgtgcagttcggccaggaaatcatcgaaacctcgacattccgtgcgctggtc
gatccgcccgcggccgacgcggcgccgccgcgccgtctcaagcgcgacgagctcgaccgc
cgcacccatgcggtagacgccagcggccgcgtgctgcgcgacaacgtctggggcgagcag
cacgaagacgccacgcgccgcgacttcacgatcaacgcgatgtactacgatccggccacg
caaaccgtgctggactatcacaacggcatggccgacatgcgcgcgcgtctgctgcgcatg
atcggcgacccggccacgcgctatcgcgaagacccggtgcggatgctgcgcgtggtgcgt
ttcgccgccaagctcgacttcgagatcgaagacacgactcgcgcgccgatcgtcaaaatg
gccgatctgatcaacaacgtaccggccgcgcgtctgttcgacgagatgctcaagctgatg
ctgtcgggccacgcgctcgcctgtttgaaacgtctgcgccaggaaggcctgcatcacggt
ctgctgccgctgctcgacgtcgtgctggaacagccgatcggcgagaaattcatcacgctt
gcgctctccaatacagacgcccgggtgcgcgccggcaagccggtttcgccgggcttcctg
tttgccaccttgctgtggcacgacgtgcagacgcgctggcagcaatttgaagcaaacggc
gaatatccggtgccggcgctgcatcgcgcgatggacgaagtcctcgacatgcaaaccgag
aaactggcgattcacaagcgcttctcgtccgacatgcgtgagatctggggcctgcagttg
cgccttgaaaaacgctcgggaagaagtgcgctgaagctgctggaacaccaaagatttaga
gcggggtatgatttcctcctgttgcgctgcgaatcgggcgaactcgatgagtcggtcggt
gcgtggtggacggagttcattgaaggagacgtcgctgcgcgtgagactctgctcacgcaa
ggcgggaaggaccggagccccagaaaacgacggaggcgcagcagtggcgccagaacccgc
aaaccgggcgacggaatggagggcggttcgccagaacgcgcagccaacgaggcgggccat
gacagctcgcacgatgactga
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