Branchiostoma floridae (Florida lancelet): 118403816
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Entry
118403816 CDS
T01074
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118403816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118403816
03036 Chromosome and associated proteins [BR:
bfo03036
]
118403816
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118403816
Chromosome and associated proteins [BR:
bfo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118403816
PBAF complex
118403816
GBAF(ncBAF) complex
118403816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF1780
Motif
Other DBs
NCBI-GeneID:
118403816
NCBI-ProteinID:
XP_035658547
UniProt:
A0A9J7HJT4
LinkDB
All DBs
Position
16:16222965..16246297
Genome browser
AA seq
1098 aa
AA seq
DB search
MPSMMAVRKKDGGPNVKFYDSPDTVAQFEQVRSWLSKNCKKHTQAEPLTNKGLASLTVQL
LQYQEDSFGKHVSKPPLTKLPVKLFMDFKPGGGLCHILAAVFKFKSDQGWRRFDFQNPSR
MDRNVEMFMNIERSLVQVGGLNDCLTRPNIYMMPEVEPKLQGKLKDIIKRHQGTVTDDKT
AATHIVFPPVPPYSEPHIRDTEDWIRPIMILNNRTLVHWWHYPDSYDTWTPSSEVNQEPD
LPPPHQGSWKVNARWLTDLEEFNEWMNEEDYEIDESEPNTIPRRNGIRMKSAAEEMSHSE
EPERRERGKPGPKKRKRSPSPDPTKKKKKGRTPGPTPDRKKRSSKEDPDQEDSTKDMDNP
SPVPNVEEVNLPKNVVNTKKDSEQQPIKGGTLADLDEKEDEEGKSEEDKTKKEGEGPKDD
SQEDNVTEQTHHIIIPSYSAWFDYNSIHTIEKRALPEFFNSKNKSKTPEVYLAYRNFMID
TYRLNPMDYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDPDSKPTPMGPPPTSHF
HVLSDTPSGLQPVQPAKSQQFASQQMMQFADKNNKDAKPATSEQQNFGLRTDMYTSKSAA
ALKAKAATATRPWTDQETLLLLEGMEMYKDDWNKVCEHVGSRTQDECILHFLRLPIEDPY
LEDSQEAVGPLAYQPIPFSQQGNPVMSVVAFLASVVDPRVASSAAKAAIEEFSKIKDEVP
PALIEAHVKKVEDAAKSGTLTPDLLLEDTGIAGTGTEEPAEKVEPMETDETKPGPSGEGD
KKEEEKTEESKEEGEKKEQEEEKEEKKEEEKKEEEEKTEKEIKKEPEEAKEEEKPQEGEK
METDQTEKPADEEKEEGKEEAKEEKPEEAVELTDEQKEKLKQREDIPKGNVATAAAAALS
AAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELEAIMDREREALEYQRQQL
LADRQAFHMEQLKAAEMRARQQAAMQLQSQQAPAQGTPGQPHGHMPPQPQAYSGQVSTTH
IAPPGPSAQPTPSTSMATQNPAIVAAMTSGPAASPTGKGTPSPVPVPGTGPQGDSAAPPT
ASEVIGTESPAPTLPIQQ
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgccttccatgatggcggtacggaagaaagacggcggaccaaacgtgaaattttacgac
tcgcccgacaccgtagcacagttcgagcaagtgcggagctggctctctaagaactgcaag
aagcacacacaggcggagccactgaccaacaaagggctggccagtctgacagtgcaactc
ttacagtaccaggaggacagcttcggcaaacatgtcagcaaaccacctctcaccaaactc
cctgttaaactgttcatggactttaagccaggcggcggcctctgccacatcctggctgca
gtcttcaagttcaagagtgaccagggatggcgaaggtttgattttcagaatccatctcgt
atggacagaaatgtcgagatgttcatgaacatcgagagaagcctggtacaggtgggtggc
ctgaatgactgtctgacccgacccaacatctacatgatgccagaggtagaacccaaactg
cagggcaaactcaaggacatcataaagagacatcagggcactgtgacagatgacaagacc
gctgccacccatatcgtgttcccacctgtcccaccttattctgaacctcatatacgagac
acagaggactggatccgtcccatcatgatcctgaacaaccggaccctggtgcactggtgg
cactaccctgacagttacgacacctggacccccagcagtgaagtgaaccaggagcccgac
ctcccccctccccaccaggggtcatggaaggtgaatgcccgctggcttacagacctggag
gagtttaacgaatggatgaacgaggaagactatgagatcgatgaatcagagccaaacacc
atcccgagacgaaatggtatccggatgaagtctgcagcagaggagatgtcccactctgag
gagcctgagagaagggagaggggcaaacctgggcccaagaagcgcaagaggtccccctcc
ccagaccctaccaagaagaagaaaaagggtaggaccccaggaccaacccctgaccgtaag
aagcggtcatctaaagaggatcctgaccaggaggactccaccaaggacatggataacccc
tcgcctgtcccaaatgtggaggaggtcaacctccccaaaaatgtggtgaacactaaaaag
gacagtgagcagcagcctattaaaggaggtaccctggcagacctggatgagaaggaggat
gaggagggaaagagtgaggaggataagactaagaaggaaggggagggacctaaagacgac
tcacaggaagacaacgtgacagagcagacccatcacatcatcatcccctcctactccgca
tggtttgactataacagcatccacaccatagagaagagggccctgcctgagttcttcaac
agcaagaacaagtccaagacacctgaagtgtatctggcgtacagaaacttcatgattgac
acctaccggctgaaccccatggactacctaaccagcacagcttgcagacggaacctggct
ggagatgtgtgtgccatcatgagagtgcatgccttcctggaacagtggggactggtgaac
taccaggtggaccctgacagtaagcccacgccgatgggcccccctcccacctcccacttc
cacgtgctgtcagacactccctcgggactgcagcctgtccagccagccaagtcacaacag
tttgcctcccaacagatgatgcaattcgctgacaagaacaacaaggatgccaagcctgcc
accagcgaacaacagaactttgggttgcgtacagacatgtacacgtccaagtcagctgca
gcactgaaggcgaaagctgcgacagccaccagaccatggactgaccaggagacactcctc
ctgctggaggggatggagatgtataaggatgactggaacaaggtgtgtgagcatgtgggc
agcaggacccaggacgagtgtatcctgcacttcctacgcctgccgatagaggacccctat
ctggaggactcgcaggaggccgtgggacctctagcctaccagcccatccccttcagtcag
caggggaaccctgtcatgagtgtggtcgccttcctggcctcggtggtcgaccccagagtg
gcgtcttcagccgccaaggctgctatagaggagttttctaagataaaagacgaggttcct
ccagcgctgatcgaggctcacgtcaagaaagtcgaggacgccgcgaagtcaggaactctg
acccctgacctcttactagaggacacggggatcgcgggaacgggaacggaagagcccgcg
gagaaagtagaacccatggaaacggacgagaccaaacctggcccgtccggggagggggac
aagaaggaggaggaaaaaacagaagaatcgaaggaggaaggagagaagaaagaacaggag
gaagaaaaggaagaaaagaaagaagaagagaagaaagaagaagaggagaagacagagaag
gagataaagaaggagccagaagaggctaaggaggaagaaaagcctcaggagggggagaaa
atggagacggaccaaacggagaaacctgctgatgaagagaaggaagaagggaaggaagaa
gcaaaagaggagaaacctgaggaggcagtggagctgacggatgaacagaaggagaaactt
aagcagagagaagacattccaaagggcaacgtggcgacggctgcagccgcggcactgtca
gctgctgctgtcaaggcaaagcacctagccgcggtggaggagaggaaaatcaagagtctg
gtggcgcttctcgtggagacgcagatgaagaaactggaaatcaagttacgccactttgag
gagctggaggccattatggacagggagagggaagcattggagtatcagcggcagcagctg
ctagcagaccggcaggccttccacatggaacagttgaaggccgcggagatgcgtgcccga
cagcaggccgccatgcagctgcagtcccaacaggcacctgctcagggcaccccaggacag
ccccatggtcacatgcccccccagccccaggcctacagtggacaggtctccactacacac
atagcgcctcccggccccagcgcccagcccacccccagcacctccatggcgacccagaac
ccagccatcgtggccgccatgacaagcggaccagccgcatcgcccacggggaaaggcacg
cccagtcccgtacccgtaccaggtacaggtcctcagggggatagtgcagctcccccaact
gcctcggaggtcatcggcacagaatcaccggctcccaccctacccattcagcagtaa
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