Branchiostoma floridae (Florida lancelet): 118404159
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Entry
118404159 CDS
T01074
Name
(RefSeq) collagen alpha-1(XII) chain-like
KO
K06238
collagen type VI alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118404159
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118404159
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118404159
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118404159
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118404159
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118404159
Hyaluronan
Extracellular matrix or blood plasma proteins
118404159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
SEA
Aldo_ket_red
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
118404159
NCBI-ProteinID:
XP_035659078
UniProt:
A0A9J7KGK2
LinkDB
All DBs
Position
2:13023512..13034389
Genome browser
AA seq
1155 aa
AA seq
DB search
MRVESAILSILGHIPGLLSVQVTHVGCVGLNIRITVNVVLVSSSSNTLVANLSAAVESGR
VGNLTVDPSSLLFGKAALLCGNSLDIIYLVDGSGSVGANNFEKVKLFIKKAVSGFVIGPA
ATQVGVIQYSSKIRQEFSMNSFQTVSGLLGAIDAMEYMQGGTLTGRAIRYASKYGFSVFD
GARRGVPKVLVVVTDGVSSDEVAIPALEAQRQGIFVYAIGVSNYDAEQLQKIASTNESSA
MVDNFNLLDSVRNTLLTSVCDVTPPVYASVILNTQFTTALRNPGSAEYTNLSVRVKTEVS
RLFLSIVGFRSVSVVDYQAAAGNRVKVVLVVFVSEFAVTSTNQTFISITHTGSIGSISVD
ASSAFVVGEETVPVVVSLVVRDLCNADLLNPDSATYRAFVTQVESAVLSILGNIPAVLSV
RVTGIRCSGLNVQVTISVTVTSTSSNLLITTVSTAVRQGSIGNLTVNADSFLSGMAALVC
QNPLDIIFLIDGSGSVGASNFEKVKQLMQKTITGFDIGPNTTQVGVIQYSSTVRQEFSMN
TFHTNEAVSTVIDEIGYIRGGTLTGKAIRYVSRYGFAERDGARPGVPKVLIVVTDGVSSD
AVKQSALEAQQKGIFVFAIGVAGYDMAQLEQIASSNRSLAVVDNFNLLDSLRNSLLTGVC
DVPSPVVISLTLTIQYSTTMRNQTSIEFGSISTSLATELSRIFVDIPGFQGLTIVGLQPT
PTNQVKATITVFVAQFSTTTMKVTFISAVQTGSLGSISVNTSSALVIEQDATQLLVSFVI
TDPCNADFLNSDSAAYMQFVIRVENALLSILGNIPGILSVKVTSISCSGLYIRVTISLGV
VSASSGGLVTAISTDVSSGSVGDLTVDPTSFISGEEALVCRTPLDIILLLDGSGSVGAYN
FEKVKQFSQKLVETFDIGPSATQIGVIQYSTRVRQEFSMNSFQSKETLSNAVDDIAYMRG
GTLTGRAIRYVSRYGFARSDGARPGVAKVLIVVTDGISYDGVATPAYKARQKGILVYAIG
VSGYDLTQLEQIASNNRTLAVVDNFNLLDSLRNTLLTGVCDAVPPVFVCVTLTTQFSIQL
RNPDSSEFSSITSALIAEVSQLFTSIVGFQGATVVGYQPAPDNQVKVSIAVFVAEFAATT
MKQTFVVAVSTGNLG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtcgagtcagcgatactatccattcttggacacatccctgggctactgtcggtt
caagtaactcatgttggctgtgtgggattgaacatcagaatcaccgtcaacgtagttcta
gtttcatcatcctcaaatacccttgtggctaatttatccgcggctgtggaatcaggcaga
gtgggtaacctgactgttgacccatcctcacttctcttcggcaaagcggcactactctgc
ggtaattcgttggatatcatctatcttgtcgacggttccggaagcgttggagcgaacaac
tttgagaaagtcaaactattcatcaagaaggctgtttcgggatttgttatcggtcccgct
gctacacaagttggggtcatacaatacagcagtaaaatcaggcaagaattttcaatgaat
tctttccaaacggttagcggtttactgggagcaattgatgccatggaatacatgcaaggt
ggcacactgacgggacgagctatccgttacgccagcaagtatggcttctcagtattcgac
ggagctcgtcgaggagttcccaaggtgctggttgttgtgacggatggagtctcgtcagac
gaagtagctattccggctttggaagcacagcgacaaggcatttttgtgtacgccattggt
gtttctaactacgacgcagaacaactgcagaaaattgccagtacgaacgagtcctcggct
atggtggacaacttcaacctcttggacagcgtgaggaacacattgctgacgagcgtgtgt
gatgtgacacctcctgtctatgcatctgtgatattgaacacccagttcacgacagcgctc
cgaaacccaggatctgctgagtataccaatctctctgtcagagtaaagacggaggtttca
cggttgttcctttccatcgttggatttcgaagtgtgtctgttgttgactaccaagcagcg
gctggcaatcgagtgaaagttgtgttggtagtgtttgtttccgagttcgcagtaaccagc
acgaatcaaacgttcatcagcataactcacacagggagtataggatcgatttctgtcgat
gcatcatcagctttcgttgttggagaggaaaccgtaccagttgtggtgagtcttgttgtg
agggacctttgcaacgccgatctactcaacccagattctgcaacgtacagggcattcgtc
actcaagtagagagcgcggtattgtcaattctaggaaacattccagcagtgctttccgta
agagtaaccggaatccgttgctcgggacttaacgtccaggtgactatcagtgtgaccgtt
acctcaacgtcttccaatctcctgatcactactgtgtctacggctgtacgacaaggaagc
atcgggaacttgactgtcaatgcggactcctttttgtcggggatggcagctctggtgtgc
cagaatccgctggacatcatttttctaattgacggatccggaagcgtcggtgcatccaac
tttgaaaaggtcaagcagttgatgcaaaagactattacagggtttgacatcggtcccaac
acaacccaagtcggggtcatccaatacagctcgacagtcagacaggaattttccatgaac
accttccacacaaatgaagctgtgtcgacagtaatagatgagataggatacatccgaggc
ggcacgctgacaggaaaagctattcgatatgtgagtagatatggctttgcagagagagat
ggagctcgtcctggagtacccaaagttctcatcgtcgtgacggatggtgtctcatctgac
gcagtaaaacagtcggcgttagaggcgcagcagaaaggaattttcgtgttcgcgataggt
gttgccggctacgatatggcccaactggaacagattgcaagcagcaataggtctctggct
gtggtggacaacttcaatctcttggacagcttgaggaactcgcttctaacgggagtttgt
gatgttccatcgcctgtggtcataagtctcacactgaccatccagtattccacaacaatg
aggaaccaaacctctattgagtttggcagtatttctacaagccttgcaaccgagttatct
cggatcttcgtcgatattccgggatttcaaggcttgaccattgtgggtctgcaaccaaca
cccacgaatcaggtgaaggcgaccattactgtgtttgtggcgcaattttcaacaaccacg
atgaaagtaacattcatcagtgccgtgcaaactgggagcttggggtcaatatcagtgaat
acgtcttctgcactcgtcatcgaacaagatgccacgcagttgttagtaagctttgtcatc
acggatccgtgcaacgccgattttctcaactcagactctgcagcgtacatgcaattcgtc
attcgagtggagaatgcgctgctttcgattcttggaaatataccgggaatactgtctgtg
aaagtgaccagcatcagttgctctgggctttacatcagagtgactattagtttaggagtc
gtatcagcgtcctctggtggacttgtcacggcaatctctacagatgtatcatcaggaagt
gtaggtgacctgactgtcgatccaacttcgttcatttcaggggaagaagcgctggtgtgt
cgaactcctctggacatcattttattgctagatgggtctggaagtgtaggggcctacaac
ttcgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatcggtccatct
gcaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattctccatgaac
agcttccaaagcaaagaaactttgtccaatgcagtcgacgatattgcatacatgcgaggc
ggtacactgactggaagggctatcaggtatgtgagcaggtacggctttgcaagatcggat
ggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatttcgtatgac
ggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctacgctattggt
gtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacaggaccttggct
gtggtggacaacttcaacctgctggatagtctgaggaacacacttttgactggagtttgc
gatgccgtgccaccagtctttgtgtgtgtaacattgactacccagttctccatacaactg
agaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgcagaggtatcc
caactatttacctccatcgtgggattccaaggagcaactgtggttggttaccaacctgcc
cctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgctgctactact
atgaagcaaacatttgttgttgctgtaagcactggcaacttgggg
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