Branchiostoma floridae (Florida lancelet): 118404162
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Entry
118404162 CDS
T01074
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04140
Autophagy - animal
bfo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118404162
04148 Efferocytosis
118404162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118404162
Membrane trafficking [BR:
bfo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118404162
Hops complex
118404162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-rbx1
zf-C3H2C3
zf-C3HC4
zf-RING_5
Wtap
TPR_11
zf-ANAPC11
zf-RING_UBOX
Mut7-C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
118404162
NCBI-ProteinID:
XP_035659079
UniProt:
A0A9J7HG85
LinkDB
All DBs
Position
17:complement(15846589..15868993)
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AA seq
962 aa
AA seq
DB search
MAFLQWRRFNFFDKEVVKDEGGQVFDGLKGIDISVCASGRGQIVIGDYEGNIHFLNRNLE
LSTFKAYELRITHLCQVKQQGILVTVGDDEPGTNPIIKVWNLDKRDKAGNPTCSRIVRAV
PGKEASPVSALAVHENLNLMAIGFQDGTVVVYRGDVTRDRHSKSRVIHHTGSSVTGLAFR
QAAKVNHLFVVTRDSVQSYNLTAKDHKEELDAFGCEPRCSVLSDASQDNQFVIGRPDAVY
FYQTDGRGPCLVFEGEKKTLQWYRGYLVVVGKENKSMPRPTPGGQSRDMSIVNVYDIQNK
FIAYSAPLPDVTDVICEWGSLYILTGENRLMQLIEKDIQTKLEMLFKKNLYVLAINLAKS
QHFDQDGLVDIFTQYGDQKYSKGDYDGAINQYVKTIGKLEPSYVIRKFLDAQRIHNLTAY
LQSLHKAQLATEDHTTLLLNCYTKLKDTNKLDQFIYSKDKEVDFDVETAIKVCRQAGYYD
HALSLAERHSQHEWYLKIQLEDIKDYQKALTYISKLDFYEAESNMKKYGKILMSEVPQQT
TELLKRLCTDYRPSDIPLADEQTLQGGMPARIHKAPADEFIHIFVSNSSKLMEFLEHMIK
VQPSSPSLLYNTLLELYLHDMAHDGSQKAELDRKSMDLLQNTDAHYDVNQALVLCQMHNY
KAGILYLYERERLYQQILRYHMDHDEYVHIINTCKKFGGQDPNLWVQALAYFARKEENCR
TQMMEVLQHIDRHNLLPPLLVVQTLAHNSTATLAVVKDYITRRLQQENDQIQEDERLIQQ
YRQETEKMRSQIQELKTSAKIFQVSKCSICNHPLELPSVHFLCQHSFHQHCFEGYAENET
ECPVCMPENRKILDIIRAQEQHKELHEQFHHQLERASDGFSVVADYFGRGVFNKVTLITD
SPAAPPPTGGNPFMEPPDVKPASKPAPKPAAAAAANPFLDEDDANNPFLDEPESTNPFGD
EF
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttttacagtggcgaagatttaacttcttcgacaaggaggtggtgaaggacgag
ggaggtcaggtattcgacggactcaagggcattgacatctctgtctgcgccagcgggcgg
ggtcagatcgtcatcggagattatgaagggaacatccacttcctgaatagaaacctggag
ctgtccacgttcaaggcttacgaactgcgtatcactcacctgtgtcaggtcaaacagcag
ggcatcctggtcactgtcggggatgatgagccgggcacaaaccccatcatcaaagtgtgg
aacctggacaagcgtgacaaggcgggaaacccgacgtgttcccgcattgtccgagccgtg
ccgggtaaggaggcctcgcctgtctcagctcttgccgtgcacgaaaacctcaacctcatg
gcgattggcttccaggatggaactgttgtggtgtatcgcggggacgttacgcgagacaga
cacagcaagtccagagtgatccaccacacggggagttcagtgaccggtctggccttccga
caggcggccaaagtgaaccacctgttcgtggtgaccagggacagcgtccagtcttacaac
ctgactgctaaggaccacaaggaggaactggatgctttcggctgtgaaccaagatgttca
gtgctgagcgacgcatcgcaagacaaccagtttgtgattggtcggccagatgcggtgtac
ttctaccagacagacgggcgcggtccgtgtctcgtgtttgagggcgagaagaaaacgcta
cagtggtaccgagggtacctggtggtggtcggcaaagaaaataagtcaatgccaagaccc
acaccggggggccagtcgcgtgacatgagtatcgtgaacgtgtacgacattcagaacaag
ttcatcgcttactccgcgccgcttcccgacgtcacggacgtcatctgcgaatggggatcc
ctgtacatcctaacaggagagaatcgtctgatgcagctgatagaaaaggacatccagacc
aagcttgagatgctctttaagaagaacctgtacgtcttagccattaacctcgccaagtcg
caacactttgaccaagacggcctcgtggacatcttcactcagtacggggatcaaaagtac
agcaagggggactacgatggggctatcaaccagtatgtcaaaactataggaaaactagag
ccatcctacgtgatacgaaagttcctggatgcacagcggatccataacctgacagcctac
ctccagtctttacacaaggcacagctggccacagaagaccataccacgctcttactcaac
tgttatacaaaactcaaggataccaacaaactagaccagttcatctactcaaaggataag
gaggtagactttgacgtggagacggcgatcaaggtgtgtcgtcaggcaggttactatgac
cacgccctgtcgctggccgagagacacagtcagcacgagtggtacctgaaaattcagctg
gaggacatcaaggactaccaaaaggccctgacatacatctccaaactggacttctatgaa
gctgagagcaacatgaagaaatacggcaagattctcatgtcagaggtgccccagcagaca
actgagttgctgaagaggctgtgtacagactacagacccagtgacatcccactagctgat
gaacagacactacagggggggatgccggccaggatccacaaagccccagctgatgagttt
atccacatctttgtcagcaactcttccaaacttatggagtttctggagcacatgattaag
gtccagcccagttccccctccctgttatacaacaccctcctggagctgtacctccatgac
atggctcacgacggaagccagaaggcagagctggacaggaagagtatggacttactacag
aacacagacgcgcactatgatgtcaaccaggcacttgtgctctgtcagatgcacaactat
aaggcaggaatcctgtacctgtacgagcgagagcgcctataccagcagatcctacggtac
cacatggaccatgatgagtatgtgcacatcatcaacacatgcaagaagtttggtggacag
gacccgaacctgtgggtgcaagcgttggcgtacttcgctcgtaaggaggagaactgccgc
acacagatgatggaagtactacagcacatcgaccgacacaacctgctcccccctctacta
gtggtacagaccctggctcacaactccactgctacactcgctgtggttaaggactacatc
acacggcgtctgcagcaagaaaatgatcagatccaagaagacgagcggctgattcagcag
tacagacaggagacagagaagatgaggagtcagatacaggagctcaaaacaagtgcgaag
attttccaggtgtctaagtgcagcatctgtaaccatccactggaactgccttctgtgcac
tttctgtgtcagcactccttccaccaacattgttttgaaggctatgcagaaaacgagaca
gaatgtcctgtctgtatgccagaaaacagaaaaatcttggacatcatccgagcccaggag
caacacaaagaactccacgaacagtttcaccatcagctggagagagcgtctgatgggttc
tcagttgttgctgactacttcggcagaggagtgtttaacaaggtcacgctgataaccgat
tctcccgccgcgccgccacccaccggtggaaaccccttcatggagccgcctgacgtgaaa
cctgcgtccaaaccggcaccaaaaccagccgctgccgctgctgccaacccattcctcgac
gaagacgacgccaacaatcccttcctagatgaaccagagagcaccaatccttttggcgac
gagttctaa
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