Branchiostoma floridae (Florida lancelet): 118404222
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Entry
118404222 CDS
T01074
Name
(RefSeq) tripartite motif-containing protein 55-like isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118404222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bfo04121
]
118404222
Ubiquitin system [BR:
bfo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
118404222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-B_box
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
zf-Nse
Motif
Other DBs
NCBI-GeneID:
118404222
NCBI-ProteinID:
XP_035659142
UniProt:
A0A9J7HJC1
LinkDB
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Position
17:complement(7203120..7221004)
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AA seq
729 aa
AA seq
DB search
MDNLERQLTCPICLEMFNKPVLILPCQHNLCRKCANDVFQSRGTPSVVGSGGRFRCPTCR
HEVVLDRHGVYGLQRNLLVENIIDIYKQEMEGTGIKITKKKEELMCEVHEEERINVYCMA
CQSPICSMCKVFGEHQDHEVATIPEVHSRQKIELSDCIAKQVAANDKLQSVISLLEEGCR
IHEMNAREVKAAICDKFDRLYSIIEDRKGVLLSLVTEEQLEKQKVLQELIAKYSGELERA
AKSVEESLLFLEEPDKAAFLTKTKELIVRINQAIESSNNANIPEQGGFNHLEVNFSKEED
VLQKLDFIKEHSSVADAETQTRGSISERAGSGSDDSNFVDSREADATSEVYETTTVTESE
GMGILSDDPPSEDARGGEGAAGGPPADDDDVFITPRTQSPSSAPSTSSQSVPHYFLNNKE
DMNPLQDRPPMSKASMEYYASVLNNNSDERPTEEAATAQASNEVTTKVAEETAKVAEETT
ARVAEVTANVTEEAASVVESKTEATTENDKEDESEVETAIGDFRRRRKFRTAQAIETAVG
ENTPRLITVTPEESMAIREFLSSVSSLTPPPTPTSPLRPAQDDTTEPGKPGESTQPKQTA
QTAQETMGILQDEEDDIVVLGPTERKFESKNGNESITGYLRKATTAGSDVNNMDATSASV
LQINHKPIRGILRRSSSEGSAGSSHGRRVRFSIEEDYKENERDSDMETELGDVEVDDAEA
MGFSFLGHD
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggacaacttagagaggcagctgacgtgccccatctgtttggagatgttcaacaaaccg
gtgctgatactaccatgccagcacaatctctgtcgcaagtgcgccaacgacgtgtttcag
tcgcggggtacaccgagcgtggtcgggagcggcggccggttccgctgcccaacctgccgt
cacgaggtcgtgctcgaccgccatggcgtctacgggctccagcgaaacctcctggtcgag
aacatcatcgacatctacaaacaggagatggaagggacagggatcaagatcactaagaag
aaggaagagctgatgtgcgaggttcatgaagaagagaggataaacgtgtactgtatggcc
tgccagtctcccatatgttctatgtgtaaagtgtttggagaacatcaggatcacgaagtg
gcgaccatcccagaagtgcacagtcgacagaagattgagctgagtgactgcatagccaaa
caagtggccgcgaacgacaagctgcagagcgtcatcagtctactggaggagggatgcagg
atacatgagatgaatgcacgcgaggtgaaggccgccatttgtgacaagttcgacagactg
tacagtatcatagaggatcgcaagggggtgctgctatcactggtaacggaagaacagctc
gagaaacagaaagtgctgcaggaactgatcgcaaagtacagtggggagctggaacgcgct
gccaagtcggtggaagaatccctgctatttctagaagagccggacaaggctgccttccta
acgaaaaccaaagaactgatagtgagaataaatcaggcaattgagagcagcaacaatgct
aacatcccagagcagggaggcttcaaccatcttgaagtgaatttctccaaggaagaagac
gttcttcagaagctagactttataaaagagcacagcagtgttgcagatgctgagacccaa
accagaggcagcatcagcgagagagcagggtccggcagtgacgactccaacttcgtagac
agtcgggaagccgacgccacgtcggaagtctacgagaccacgaccgtgacagaatcggaa
gggatggggatcctgtcggacgaccctccgtccgaagatgcccgaggtggtgagggagct
gcaggaggtcctcctgctgatgacgatgacgtcttcatcactccgaggacgcagagccca
agctccgccccttcgacgtctagccaatcagtaccccactacttcctaaataacaaggaa
gatatgaaccccctgcaagaccgaccgcctatgagtaaagccagtatggaatactacgca
tcagtgttgaacaacaactcggacgaacggccaacagaagaggctgctaccgcgcaagcg
tcaaacgaagtcacgacgaaggtagccgaagagacagcgaaggttgccgaagagacaacg
gcgagggtggccgaagtgacggcgaatgttaccgaagaggcggcgagtgtggtcgaatct
aaaacggaagctacgactgagaacgataaagaggacgaatctgaagtagaaacagctatc
ggcgactttcgtagaagaagaaagtttagaacagcacaagctatcgaaactgcagtaggc
gagaatacacccagattgataactgtcactcccgaagagagtatggccatcagagagttt
ttatcgagcgtgtcgtcgcttacgccgcccccgacccccaccagtccgctacgtcccgca
caggacgataccacggaaccgggaaagccgggggagtccacgcaaccgaagcaaacagca
caaacggctcaggaaactatggggatcttacaggacgaagaggacgacatcgtcgttctt
ggaccaacagaacgcaaattcgaaagcaagaacggaaacgaaagcatcacgggataccta
cgtaaggctacaacagcaggaagtgacgtcaacaacatggacgccacatccgcttcggtc
cttcagataaatcacaagccgatccgtgggattttgagacggtccagcagtgaggggagt
gcgggtagcagtcacggaaggcgcgtacgattctcaattgaggaagactacaaggaaaac
gagagagactcagacatggagactgaactgggagatgtagaagtggacgacgcggaggct
atgggcttctcttttctgggccacgattga
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