Branchiostoma floridae (Florida lancelet): 118404634
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Entry
118404634 CDS
T01074
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
118404634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118404634
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
118404634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
118404634
NCBI-ProteinID:
XP_035659759
UniProt:
A0A9J7HKS4
LinkDB
All DBs
Position
17:8460337..8481199
Genome browser
AA seq
1353 aa
AA seq
DB search
MPKPNTLFNYFSKSPAPAKNKSSPTVGDTPEFKGKGNSPKEGAKSAKTSPKSAKQNGGVA
IQYQPGDLLWSKLSGYPWWPSLVCNHPTTGSHIKPGKTPMVHVQFFDEPPSRSWISHKMT
KPFTEATAKDAGTGGPLFTPNPKVQRGAKNAEGALQLSREDRLALVVELLPSEDEEDMDV
DDIHNGVDEESGSECEEEVATKKRPSKLRRKKGSKRIRLAVDSGSESEEEEFKPDSEDDD
SDVSSGVDEKDISEPETESEPESPIKPTRKRKREPAKTPSRGKAKPDLSSFSTPSSRLGT
PSSTATPGGTVRTPGAHQNTKNKLAMFSAPESPSAEQGSEEKAKFDHETYEFLQEGNIRD
AKKRLPTDEDYDPRTLYVPDSFLMKNTTPLMRKWWEVKSQLYDTVLFFKVGKFYELYHMD
AITGVNELGLIFMKGSQAHCGFPEIAYGRYSDTLVQKGYRVARIEQTETVPQSEERYRKL
AKPTKFDKVVRREVCRITTKGTKTYSFLEGDTGEAANSYLLAIAEKANEDIAGDQSVYGV
CFVDTSIGKFHIGQFQDDRHSSRLRTLIAQYTPSQVLFERGKLSSKTQSILNSNLSTALR
EALSSSEFWDAPKTLKFLAEKSYFSETGTEDEEETGDSCWPQALKKMTSDADSLGLTASD
DYELGVSSLGAVVWYLKRCYIDEEMLSMCNFEEYTPVDSQAGVTEKSAPDFTTGKQHMVL
DGVTLNNLEIIENSVTGSREGTLLDRLDMCCTPFGKRLFKQWLCAPLCNPASINDRLDAV
EDLMACRDVVAEVTEILRKVPDLERLLQKIHTLGLARRNKDHPDGRAVFFEDVNYSKKKI
SDFLSALDGFRSAMRIVRMFKDKVDDFKSKLLKQSISLESDKEGGGRFPNLSFQLMYFDR
AFDHNAARKNGVIIPKEGVNRDYDEALSDIKSVHREMDRYKDRQKQRMGCSTISFWSSGK
TRYCLEIPESALKRHVPDEYELSSSKKGFKRYTTQEIKDMVKTLEEAEGRREAALKDTMR
TIFHSFDESYKEWDAAVQCVSVLDVLMSLMQYSLCGDGDMCRPELVTPEKNMQPFIEIRE
GRHPCICRTYSGGDFIPNDTVVGTSADEDMEESGGTDASSVVLVTGPNMGGKSTLMRQVG
IITVIAQLGCYVPAQSCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATCHS
LVLLDELGRGTATYDGTAIACSVVKELSENLRCRTLFSTHYHSLVEEFSHDPNVRLGHMA
CMVENENDEDPSQETITFLYKFVKGACPKSYGFNAARLADLPEEVIRVAQDKAKEFEENT
ERLKLFRAFNKLCVTKPSAVNEFVSLQNLIKVA
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaacctaacactctcttcaactatttctccaagtctcctgctccagccaagaac
aagtcttccccgacagtcggagacaccccggagtttaaggggaagggaaactcgcccaaa
gaaggagcgaaatccgccaagacatcgccgaaatctgccaaacaaaatggcggtgtggct
atacaataccagccaggagacctactgtggtccaaactgtccggttacccctggtggccc
agtctggtttgtaaccaccccacgaccggttcacacatcaaaccaggcaagacccccatg
gtgcacgtccagttctttgatgagccgcccagtcggtcatggatcagccacaagatgacc
aagcctttcacagaggccacagctaaggatgctggtacgggcggccctctcttcacaccc
aacccgaaggtacagcgtggcgccaagaacgcagagggggcgctacagttgagccgtgag
gaccgcctggcactggtcgtggagctgctaccctctgaagacgaagaggacatggacgtt
gatgatatccacaatggtgtagatgaggagtcagggagtgagtgtgaggaagaggtggct
acaaaaaagagaccctccaaactccggaggaagaagggaagcaagagaatcaggctggct
gtagactctgggagtgaatctgaggaagaagagtttaaacctgacagtgaagatgatgac
tctgatgtcagctcaggagtggatgagaaggacatctctgaacctgagacagagtcggag
ccggaaagccccatcaagcccacaaggaagaggaagagggagcctgccaagacgccatct
cgagggaaagccaagccagacctgagttccttcagtacaccctcctcccgtcttggtacc
cccagtagtacagccactcctggtggtacagttagaactcctggggctcaccagaacacc
aagaacaaactggccatgttctctgcacctgagtctccctctgcagagcagggttctgaa
gagaaggccaagtttgaccacgaaacatacgaatttctgcaggagggaaacatcagggat
gctaagaagagattaccgactgatgaagactatgaccccagaaccctgtatgttcctgac
agctttctcatgaagaacactacaccgctgatgaggaagtggtgggaagtcaagtcccag
ctatacgacactgttctcttcttcaaggttggtaagttctatgagctgtaccatatggat
gccatcacaggggtcaacgaactgggactcattttcatgaagggttctcaggcccactgt
ggcttccctgagattgcgtacggtcggtactcggataccctcgtccagaaggggtaccgc
gtggccaggatcgaacagacggagacagttccacaatcagaggaaagatacagaaaattg
gctaaacctaccaagtttgacaaagttgtgaggagagaggtctgtaggatcactactaaa
ggtaccaagacatacagttttctggaaggagacacaggagaggctgctaacagctaccta
ctggccatagctgagaaggccaatgaagacatagcaggagaccagagtgtgtatggagtc
tgttttgttgacacgtccatcgggaagtttcatataggacagttccaagatgatcgacac
agctccagactacgaacactgattgcacagtacacaccttcccaggtcctgtttgaaaga
gggaagctgtcttctaagactcagagcatcttgaacagtaacctaagcacagctctgagg
gaggccctgtctagttcggagttctgggatgcaccaaagacactgaagttccttgccgag
aagagctacttcagtgagactggtactgaagatgaggaggagacaggagatagctgttgg
ccacaggcacttaagaagatgacttctgatgctgactctctgggcctaactgcatcagat
gactatgagctgggtgtgagttctctgggagcagttgtctggtacctgaagagatgttac
atagatgaagagatgttgtccatgtgtaactttgaggagtacacacctgtagacagccag
gctggagtgactgagaaatctgcacctgacttcaccacaggcaaacagcatatggtattg
gatggtgtgaccttgaacaaccttgagatcatagagaacagtgtgacagggtcacgggag
ggcaccctgctggacaggctggacatgtgctgtactccgtttggcaagagactgtttaag
cagtggctgtgtgctcccctgtgcaatcctgcctccatcaatgatagactggatgcagta
gaggacctgatggcctgcagggatgtggttgccgaggtaacggagatcctcaggaaagtt
cctgatctggagaggctgctacagaagatccacacattaggtttggctcggcggaacaag
gaccaccctgacggccgggcggtgttcttcgaggacgtgaactacagtaagaagaagatt
tctgacttcctgtctgcgctggacggcttcaggagcgccatgaggatcgtcaggatgttc
aaggacaaagtggatgacttcaagtccaagctgttgaagcagtccatctccttagagagc
gacaaagaagggggagggcgattcccaaacctgtcgtttcagctgatgtacttcgaccgc
gcgttcgaccacaacgctgcaagaaagaacggtgtgatcatcccgaaggaaggagtgaac
cgtgactacgacgaagcgctgagtgacatcaagtcagtccaccgggaaatggacagatac
aaggacagacagaagcagaggatgggctgctcgaccatatcgttctggagttccggtaag
acgcggtactgtctggagatccctgagtcggcgctaaagcgacacgttccagacgaatac
gagctctcgagttctaaaaaggggttcaagcgctacacgactcaggagattaaggacatg
gtgaagacactggaggaagctgagggaaggagggaggcagcactcaaggacaccatgagg
accatcttccacagttttgatgagagttacaaagagtgggatgcagcagtgcagtgtgtg
tcagtgttggatgtcctgatgagtctgatgcagtacagcctgtgtggggacggggacatg
tgccgtccagaactggtcactcctgagaaaaacatgcagccgtttattgagatccgtgaa
ggccgccacccctgtatctgtaggacatactcaggaggagacttcatacccaatgatact
gtggttggcacctccgcggatgaagatatggaggagtctgggggtactgacgctagcagc
gttgtcctggtaacggggcccaacatggggggcaagtcgacactcatgcgccaagtgggc
attatcaccgtcatagcccagctgggatgttatgtgcctgcacagtcttgccgcctgact
cccatagatcgagtcttcaccagactgggggcaagtgaccgcatcatgtcaggtgagagt
acgttcttcgtggaactgagtgagacatccagtatcctccaacatgctacttgccactca
ctggtgctactggatgaactcggacgaggaactgcaacctatgatggtacggccatcgca
tgttctgtcgttaaggagctgtcggagaacctgcgctgtcgtacgctgttctccacacac
taccactcactggtggaggagttctctcatgaccctaatgtccgactgggtcacatggca
tgtatggtagagaatgagaatgatgaagaccccagccaggagaccatcaccttcctctac
aagtttgtgaagggggcgtgtcccaagagctatggcttcaatgctgccagactggctgac
ctgcctgaggaggtgattcgtgttgcccaagacaaggccaaggagtttgaagagaacaca
gagaggctgaaactcttcagggccttcaacaaactgtgtgtgaccaagccttcagctgtc
aacgagtttgtatcacttcagaacctcatcaaggtggcttag
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