Branchiostoma floridae (Florida lancelet): 118404659
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Entry
118404659 CDS
T01074
Name
(RefSeq) ATP-dependent RNA helicase DDX54-like
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bfo03009
]
118404659
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118404659
Ribosome biogenesis [BR:
bfo03009
]
Eukaryotic type
Pre-60S particles
Helicases
118404659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
Flavi_DEAD
Utp25_C
Motif
Other DBs
NCBI-GeneID:
118404659
NCBI-ProteinID:
XP_035659793
UniProt:
A0A9J7HI21
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All DBs
Position
17:5063494..5079087
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AA seq
844 aa
AA seq
DB search
MGQKKQRKPRRKFGDDESDGEGEFELVPETNPSAMKYSFPSTDTTSDVEPDMRQLVTAQN
KKKKKSGGFQSMGLSHGIFKGVMKKGYKVPTPIQRKCIPIIMDGKDVVAMARTGSGKTAA
FLIPMFEKLRAHSTSGARALILAPTRELALQTMKFTKELGRFTGLRAALILGGDSMEDQF
AALHENPDIIIGTPGRLLHVLVEMEQKLMTVEYVVFDEADRLFEMGFADQLQEIIGRLPE
ARQTLLFSATLPKLLVQFAQAGLNDPTLIRLDVDTKISEQLKMSFLAMRDADKPAVLLHL
LRTVVKPEEQTVVFLATKHHVEYVKELLTEAGLSCSAVYSSLDQTARKINIAKFTHKKTK
VMLVTDIAARGIDIPMLDNVINYNFPCKPKLFVHRVGRVARAGRSGTAYSLVAPDETPLM
LDLHLFLGRAVKVAGKDKICVPDWDGLYGKVPQSIIDDEDANIRVYQENNLELGNLKRVS
ERGYSAYLKSRSAPSHESVKRMKGMDTAQMGFHPLLGNMIHEVEDKLAEFVDGVRNYKPN
STIFEVSASNKNPAFSVMKSKRSVHQGVIRRLQDQKSSKQDIGGAAVHASNTEMTSEQDI
EDTFSTVVAPGHKRKHAEDDGNVGKKQKQGFRDEEHFLPYRPQDHHSEKGLGLESSFQVQ
ASDAMLDLAADEAEKAKQQKNQLKWDRKKKKFVKEGIDLKKKKIKTESGTWVSASFKTDS
YKRWLQQSKMREQEREEEENEQDQSTGQKGGKGKKQWKGKKRGKNRPTGGDKSPGQKFPS
KFGGKRKDGQQPRNQGGARRPRSELKSTDQILKSRIKKEREQAFQGARQAIKQKRRAIAG
GKRH
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgggtcagaaaaagcagagaaagcccaggcggaaatttggggacgatgaatcggatggc
gagggagaatttgagctcgtgccagagacgaacccctctgccatgaagtacagtttcccc
agtactgacaccacctctgatgtggaaccagacatgagacagctggtcacagcacagaac
aagaagaagaaaaagtcagggggcttccagtctatgggtttgtctcatggcattttcaag
ggagtcatgaagaaaggatataaagtcccaactcctattcaaagaaagtgcatccctatc
atcatggatggtaaggatgttgttgccatggcgaggacaggtagcgggaagaccgcagcg
ttcctgatccccatgtttgagaaactccgcgcccacagcacgtccggcgcccgagccctg
atcctggcccccaccagggaactagcgctgcagaccatgaagtttactaaggagcttggc
agatttactggtttaagggcagctcttattcttggtggagacagcatggaagatcagttt
gcagccctacatgagaatccagacataatcatcggcacccccggccgcctgctgcatgtg
ctggtggagatggagcagaaactgatgacagtggagtatgtcgtgtttgatgaggcagac
aggttgtttgagatgggttttgcggaccagctccaggagatcatcggtcgtcttcccgag
gcacgacagacgctgctgttctccgccacgctgcccaagctgctcgtacagtttgcacaa
gcaggtctgaatgaccctacactcatcaggttggacgtggacacgaagatcagcgagcag
ttgaagatgtcgttcctcgccatgcgtgatgcggacaagcctgctgtcctgctccacctg
ctgagaacagttgtgaagccagaggaacagacagtcgtgttcctggcaactaagcaccat
gtggagtatgttaaagagttgttgacagaagcaggcctgtcctgtagtgcagtgtacagc
tcactagaccagacagccaggaagatcaacattgccaagttcacccacaagaagactaag
gtcatgctggtgacagacatcgctgcccgcgggatagacatccccatgttggataacgtc
ataaactacaacttcccatgcaagccaaagctctttgtccatagagttggtcgagtggcg
cgagccggcaggtcaggtacagcgtactccctggtggccccagatgagacccccctcatg
ttagacctgcacctgttcctggggagggcagtcaaggtcgccggcaaggacaaaatctgt
gttccagactgggatggtttgtacggcaaggtcccacagtccatcatagatgatgaggat
gccaacatccgggtgtaccaggagaacaatctggagctggggaacctgaagcgcgtgtcg
gagcgggggtacagcgcctacctcaagtcacggtcagctccgtcacacgagtccgtcaaa
cggatgaagggaatggacacggcacagatgggctttcatcctctactgggtaatatgata
catgaagttgaggataagctggcagagtttgtggatggggtacggaactacaaacccaac
agtaccatttttgaagtctctgcgagcaataagaacccagcattttctgtgatgaagagt
aagaggagtgttcaccagggggtcatccggcgcctgcaggaccagaaaagcagcaagcaa
gatatagggggcgctgctgtacatgcaagtaacacagaaatgacctcagaacaggatatt
gaggacaccttctccactgtggttgcaccagggcacaagaggaaacatgcggaagatgac
gggaacgtgggaaagaaacagaagcagggcttcagagacgaggaacatttcttaccatac
agaccacaggaccaccactctgagaaaggactcgggttagagagctccttccaggtccag
gcttcggacgccatgttagatctggctgcagatgaggctgagaaagccaaacagcaaaag
aaccagctcaaatgggataggaagaagaagaagtttgtgaaggaaggaattgatctgaaa
aagaagaaaatcaagacagaaagtggaacctgggtatctgcatcattcaagactgactca
tacaagcgttggttacagcagagcaaaatgagggagcaggagagagaagaggaggagaat
gagcaggaccagtccactggccagaaaggggggaaggggaaaaagcaatggaaggggaaa
aagagaggaaaaaacagaccaacaggaggggataagtctccaggacagaagttcccatca
aagtttggtggtaagaggaaggatggacaacagccaaggaaccagggaggagcaagaaga
cctcgctcagaactcaagtctacagaccagatcctaaagagtagaataaagaaggagaga
gagcaagccttccagggagctcggcaagctatcaagcagaaaaggagagccatagcaggg
ggcaaaagacactga
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