Branchiostoma floridae (Florida lancelet): 118404688
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Entry
118404688 CDS
T01074
Name
(RefSeq) NPC intracellular cholesterol transporter 1-like
KO
K12385
Niemann-Pick C1 protein
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03265
Virion - Ebolavirus and Lyssavirus
bfo04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus and Lyssavirus
118404688
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
118404688
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
bfo02000
]
118404688
Transporters [BR:
bfo02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
118404688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
118404688
NCBI-ProteinID:
XP_035659827
UniProt:
A0A9J7KI57
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Position
17:complement(12936247..12956021)
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AA seq
1368 aa
AA seq
DB search
MWKWLRLWVTAACLVVVRCADEGHCVWHGECGASLGSKHYNCEYTGPPKPLEDREGRDIL
SQLCPHLAGDGSSPPKVCCDINQIKTLQNNMQVPQQALQRCPSCFQNLVRLYCELTCSPN
GSNFITIDKTSPYTPPTQTPFHTPSFAAHNLTAFIETPNEAPIIQLNENDVLQPRSDVFS
VGNDTQQYNVVEVTYYVSFDFAWGLYNSCQMVQFPASNSRALSILCGMAAKDCTSPEIWL
GYMGSKDNGQTPFQINFVINNTGPNSTIHPMDDQAFSCAQSPDDVSAACSCQDCPAVCGP
RPEPPPPAKKWQIFGIDGMTVVMSFSYVGFAFLFCMVLTLTFLIRRCGSKPSDSDDLCSF
VGEDSINSDPALVNQKIVTSADIGCFEKCGEMMENFMFNVFQRWGLFCARHPVIVFVCGV
AVIATCAAGLAKFQVVTDPVLLWSAPDSRSRVQKDYFDQHFGPFYRAEQLIITAPGSEWT
NYDPYPSGDPIPFSPVLRKDILHQILDLQTNIEQLQVWYEEEKRNITLEDICMKPLAPVN
NNCTIMSPLNYFQNSHHMLDLRIGDFFYTYADYHTHLMYCAEAPASVNDTTQLHTSCLGT
FGGPVFPWIALGGYEGENFTQAEALIITFVVDNSLNETEVNRALAWEKAFVDFMKNYTDP
ANPANSNLSISFSAQRSIEDELDRESATDIYTILVSYLIMFAYISIALGQFYSCSRLLID
SKISLGLCGVLIVLCATACSIGVFSYAGIPATLIIIEVVPFLVLAVGVDNIFILVQAFQR
DERRKNEELEDQIARILGQVAPSLFLTSFSETVAFCLGGLSNMPAVRVFSLYAGLAVFFD
FLLQITCFVSLLTIDARRQENNRMDFCCCVKVAGKSDVPKSEGFLYAFVKHIYAPIVLKD
WIRPFVILLFAGAVAYSGAVVNKLDVGLDQKLSMPEDSYVLEYFSNISRYLKVGAPVYFV
VEEGHDYTTKEGQNMICGSSGCNRDSLVQQIGDAHLIADYSKIFAAPSSWMDDYFDWMNP
LGNPPCCRVYNNTERFCNASVDSDTCVGCRSPKDRGIRPVHDEFMEFLPMFLTDVPTTDC
AKGGHAAYNSAVDLKRNDVGATYFMTYHVNCNTSADYINALKYAEELASNITTAMNITDN
KYKVFPYSYFYVFYEQYLTIYHDTMTSLSWSALAVFLVSFCMLGFDLVSALIIILTIGMI
VLDMMGVMYLWGISLNAVSLVNLVMAMGISVEFCSHVTRAFAVSTKTSRVERAKEALVHM
GSSVFSGITLTKFGGIVVLAFAKSQLFQVFYFRMYLSIVLLGFSHGLIFLPVLLSYIGPS
VNKAKLFSQQNGVQSQPVNNERTPLLHDSRRREAGSNAPLGTSNGIYV
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaatggctacgtttgtgggtgacagcggcctgcctggttgttgtaagatgtgcg
gatgaaggccactgcgtgtggcacggagagtgtggagcaagcttaggaagcaagcactat
aactgtgagtacacggggccccccaaacccctggaggacagggagggtcgggatatcctg
tctcagctgtgtccacacctcgcgggggatggatcctctccgccgaaggtctgctgcgac
atcaatcagatcaagaccttacagaacaacatgcaggtcccccagcaggccctacagagg
tgtccctcatgtttccagaaccttgtgcgcctgtactgcgagttgacttgctcacctaac
gggagcaacttcatcaccatcgacaaaacctccccctacacgcccccaacccagaccccc
ttccacaccccatccttcgcagcccacaacctcacggctttcattgaaactcccaatgaa
gcgccaatcatacagctcaatgaaaacgacgtcttgcaaccgaggagtgatgtgttcagt
gtaggaaacgacacccagcagtacaacgttgtggaggtgacttactacgtcagtttcgac
ttcgcctgggggctgtacaactcctgccagatggttcagtttcccgccagcaactcgcga
gcactgagcatcctgtgcggtatggccgctaaggactgcaccagccccgagatctggctt
ggctacatggggagcaaggacaacggtcagacgcccttccagatcaactttgtgatcaac
aatacgggaccgaactccacgatccacccgatggacgatcaagcgttctcgtgcgcgcag
agcccggatgacgtgagcgccgcgtgtagttgtcaggactgtcccgcggtctgtgggccg
cggcccgaaccacccccaccagcgaaaaaatggcaaatcttcggcatcgacgggatgaca
gtcgtgatgtcattttcgtacgttgggttcgctttcctgttctgtatggtgttgacattg
acgttcctgattcgtcgatgtggctcgaaaccgtccgacagtgacgacttgtgttcgttt
gtgggtgaagacagtatcaacagcgacccagcacttgtaaatcaaaagatcgtgacctca
gcggacatcggttgttttgaaaagtgtggagagatgatggaaaacttcatgtttaacgtg
ttccagcgctggggtctgttctgcgcccgccatcctgtcatagtgtttgtgtgtggcgtg
gcggtgatcgcaacctgtgcagctggtctggccaagttccaggttgtaacggaccctgtc
ctgctgtggtcggcgccggacagccgttcccgcgtacagaaggactacttcgaccagcac
ttcggcccgttctaccgcgctgaacagctgatcatcaccgcaccgggcagcgagtggacc
aattacgacccctacccctcaggtgaccccatcccattctcacctgtgctcaggaaggac
atcttacaccagatccttgacctccagacaaacatcgagcagctgcaggtttggtatgag
gaggagaagcgtaacatcaccctggaggacatttgcatgaagcctctcgcgcccgtcaac
aacaactgtaccatcatgagcccgctgaactacttccagaacagccaccacatgttagat
ctcaggattggggacttcttctatacttatgctgactaccacactcatctcatgtactgc
gcagaagccccagcgtctgtgaatgacaccacccagctacacacatcgtgcctcggcacg
tttggtgggcctgtcttcccatggatcgctctgggagggtacgaaggtgagaacttcaca
caggcagaagcattgatcatcacatttgttgtggacaactcgctgaacgagacggaggta
aaccgggcgctggcgtgggagaaggccttcgtggacttcatgaaaaattacacggacccg
gcgaatcctgccaactctaacctcagcatcagcttttctgcacagaggtctattgaggat
gagcttgaccgtgagagtgccacagacatctacaccatcctggtcagctacctcatcatg
ttcgcctacatctccatcgctctggggcagttctacagctgcagccgtctactgattgac
tccaagatctcgctgggtctgtgcggagtgttgatcgtgctgtgtgcgacggcatgttcc
atcggcgtgttcagctacgcggggattcccgccaccctcatcatcatcgaggtggttccc
ttcctggtgctggctgtgggggtggacaacatcttcatcctggtacaggccttccagcga
gacgagcgcaggaagaatgaggagctagaggaccagattgcccgtatcctcgggcaggtc
gcacccagcctcttcctcacaagcttctccgaaactgtcgccttctgtctcggtggtctg
tccaacatgccggcggtgcgtgtgttctcgctgtacgccggtctggccgtgttcttcgac
ttcctgctacagatcacatgcttcgttagtctactgaccatcgacgcacgaagacaggag
aacaacaggatggacttctgctgttgtgtgaaggtcgcggggaaaagcgacgtcccgaag
tcggaagggttcctctacgctttcgtcaagcatatctatgcgccaatcgtgcttaaggac
tggattcgaccctttgtcatcttgttgtttgcgggtgcagttgcctacagtggagccgtt
gtaaacaaactggacgtcggacttgaccaaaaactctccatgcccgaggactcgtacgtt
cttgagtacttctccaacatcagcaggtacctgaaggtcggagcaccggtgtactttgtg
gtggaggaaggtcacgactacacgacgaaggaaggacagaacatgatctgtggcagcagt
gggtgtaaccgagactctctggtgcagcaaataggggacgcacatcttatagctgactat
tctaagatctttgcggccccctcctcatggatggacgactactttgactggatgaacccc
ctgggcaaccccccctgctgcagggtctacaacaacacggagaggttctgcaatgcatca
gttgacagcgacacctgtgtggggtgccgttccccgaaagaccgcgggatccggccggta
catgatgagtttatggagtttctgccgatgtttctcacagacgtcccgacaacggactgt
gccaaaggtggtcatgctgcctataactctgcagtggacctgaaacgcaacgacgtagga
gcgacgtacttcatgacgtaccacgtaaactgcaacacatctgctgactacatcaatgca
ctgaagtatgccgaggagctggcaagcaacatcaccacagccatgaacatcacagacaac
aagtataaggtcttcccttacagctacttctacgtgttctacgagcagtacctgacgatc
taccacgacacgatgaccagcctgagctggtcggcgctggccgtgttcctggtctccttc
tgcatgctgggattcgacctggtctccgctctcatcatcatcctcaccatcggcatgatc
gtgctggacatgatgggggtcatgtacctctggggcatcagtctcaacgccgtctcattg
gtcaacctcgtcatggccatgggtatttctgtggagttctgttctcacgtgacgcgggcg
ttcgctgtcagcacaaagacttcccgcgtggagagagccaaggaagctctggtgcacatg
ggcagttctgttttcagtggcatcacactgacgaagttcggcgggattgtcgtcctggcg
ttcgcgaagtctcagctgttccaggtgttctacttccggatgtacctcagcatcgttctt
ctcgggttctcccatggtctcatcttcttacctgtgctgctcagttatataggtccttct
gtaaacaaggcgaaactcttctcacagcagaacggcgttcagagtcagcccgtaaataac
gagagaacgccgcttctacacgactctcggagacgtgaagcaggaagtaacgcaccacta
ggaacgtccaacggcatctatgtttag
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integrated database retrieval system
