Branchiostoma floridae (Florida lancelet): 118404822
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Entry
118404822 CDS
T01074
Name
(RefSeq) DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bfo03009
]
118404822
03012 Translation factors [BR:
bfo03012
]
118404822
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118404822
5.6.2.5 RNA 5'-3' helicase
118404822
Ribosome biogenesis [BR:
bfo03009
]
Eukaryotic type
Other ribosome biogenesis factors
118404822
Translation factors [BR:
bfo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
118404822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
AAA_19
Viral_helicase1
zf-AN1
DEAD
AAA_16
Helicase_RecD
ResIII
nSTAND3
Flavi_DEAD
XAF1_C
AAA_22
Herpes_ori_bp
UvrD-helicase
AAA
SLFN-g3_helicase
AI2M-like_HNH
ABC_tran
IstB_IS21
cobW
PhoH
NTPase_1
Herpes_Helicase
PIF1
AAA_25
NPHP3_N
RuvB_N
bpMoxR
UvrD_C_2
Znf_XAF1_N
AAA_33
Motif
Other DBs
NCBI-GeneID:
118404822
NCBI-ProteinID:
XP_035660074
UniProt:
A0A9J7HLC2
LinkDB
All DBs
Position
17:complement(2598698..2622484)
Genome browser
AA seq
951 aa
AA seq
DB search
MSEQSVGLYGRSLLTLRPGHAGGARELPSHTFTPGDIVGLTPSSEARPGATQVSGVVSYV
TTTAISVAFDESIDVLSLDGDALYNIVKLANDVTYKRLKRALKDLETYEHTCSSHLVQVL
FGEAELSSPLTQLTFPGVTSADTIDWCNPSLNESQREAVQFALRQREVAVIHGPPGTGKT
TAVVEIITQAVKQKLKVLATAPSNVAVDNLVERLAGYGIHAIRLGHPARLQEGIKRFSLD
ALLAGSDGAKIVQDVRKDMTKTLSQMKKCRGKAGEYQALRQEMKHLRKELREREEKASLE
ILAGAAVVLATNTGASPDGPLKLLPRKHFDLVVIDECAQALEVSCWIPLQYAGRCVLAGD
HLQLPPTIISHKAAAQGLSVSLMERVIGLHGDQIVRMLTTQYRMHRDIMAWPSTELYKGK
LVAHESVASHLLCDLAPVEENEDTALPLLLVDTTGCDLWEMDVPSDQSKGNKGEADLTRT
HVERLIQSGVCQEDIAVISPYNLQVELLRQHLSCKYPRLEIKSVDGFQGREKEAVVISLV
RSNENREVGFLAEDRRINVAITRARRHLAIICDSETVSHHKFLSSLMDYMSTQGEVRSAH
QYSNDSEVTVSADYSNVPVNVHRKQAPKETSGSTQTKGADTCTTEKDDVTAEVKQEPQPS
EDVGPLEKKEESDESKTGTLLQNQQAVDGTQKANNPTIEQDGSQQISESVGGTKPKRKRN
RNRNKNKFSQENIPNDNTEVNQKQTITTEKEQTETLASNFATCEHCGKELPKPNLELHTM
HCRRVAELKGKLQAANAPREKVQAPPKQASSRQENKRRPKSGKKKQGGRNLDEKEDGNDD
FDAMLARVVKEDHSCHYERCKNSVATVGQFCTYCRKLYCLSHHMPEVHGCGEDAHMEARA
RLSKDTIVEGKLYAGAQKKLKPEKRAYLQRKLDKKLSGMEEKRQPKRPSEK
NT seq
2856 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcaaagcgtgggtctgtacgggcggtccctgctcacactacggccggggcac
gcaggcggggcgagggaactgccctcccatactttcactcccggtgatattgtgggtctg
acgccctcatcagaagccagaccaggagcgacccaggtgtcgggtgtcgtgtcgtatgtc
acgaccacggccatcagcgtggcatttgacgagtctatagacgtcctctcattggatggt
gatgctctctacaacatagtcaagctagccaatgatgtcacatacaaacgtttaaaaaga
gccctgaaagacctggagacgtacgagcacacctgttcctcacacttggtgcaggtgctg
tttggtgaggcagagctcagctcacctctcacacaactcacctttccaggtgtcacctca
gcagatacgattgattggtgtaacccatcgctgaacgagtcgcagcgagaggcggtacag
tttgcgttacgacagcgggaagttgcggtgatccacggaccccccggtaccggtaaaaca
accgccgtggtagaaatcatcacccaagccgtcaagcaaaaactcaaggttcttgcgact
gctccgtccaacgttgccgtggacaacctggtagaacgcctggcaggttacggtatccat
gccatccgtttgggccaccccgcccgactgcaggagggtatcaaacgcttctcgctggat
gcacttctggcgggaagtgacggggctaaaattgtacaagatgtcaggaaagacatgacg
aaaacactgtcccagatgaagaagtgccgaggcaaggcaggagagtaccaggcactacgg
caggagatgaaacacctgcgcaaagaactccgggaacgagaggagaaggcttcgcttgag
atcctggcgggcgcggccgtcgtcctggcaaccaacacgggggcatcgcccgacgggccg
ctcaagctgttgccacggaaacactttgacttggttgtcatcgatgaatgtgcacaggcc
ctggaagtgtcgtgttggatcccgctacagtacgcaggccgctgtgttctcgctggggat
catctacagctgcctccaaccatcatatcacacaaagctgctgctcaaggactgagtgtg
tcactcatggagcgtgtcattggtctccatggcgaccagatcgtgcgtatgttgacaaca
cagtaccgtatgcaccgcgacatcatggcctggccctctactgaactgtacaagggcaaa
ctggtcgctcacgagtcggtggcctctcatctgttatgtgaccttgctcctgtagaagag
aacgaggatacggccctccccctcttgctggtggacaccaccggctgtgacctctgggag
atggacgtgccgagtgaccagtccaagggcaacaaaggtgaagccgacctgaccaggacc
catgtggagcggctgattcagagtggggtgtgtcaggaggacatcgctgtgatatctcca
tacaatctacaggttgagttgctgagacaacacctgtcctgtaagtaccctcgtctggag
atcaagtctgtggatggattccagggcagagagaaggaagcagtcgtcatctcacttgta
cggtcaaacgaaaacagggaagtcggtttccttgccgaagatcgccgtatcaacgtcgcc
atcacacgggcacgccgacatcttgccatcatctgtgattctgaaactgtcagtcaccac
aagttcctgtcatccctcatggactacatgtctacacaaggggaggtcaggagtgctcac
caatacagtaatgatagcgaagtgacagtgtcagcagactacagcaatgttccagtcaac
gtgcacagaaaacaggccccaaaagaaacgtcaggatcaacacaaaccaaaggggctgat
acatgtactacagaaaaggatgatgttacagcggaggtgaagcaagaaccacagccctct
gaagatgttggaccactagagaagaaagaagagtcagatgaatctaaaacagggacatta
ttacaaaatcaacaggctgtggatggcacacagaaagcaaacaacccaacaatagaacag
gatggctcacagcaaatttcagaatctgttgggggcaccaaaccaaaaaggaaacgaaac
agaaacagaaacaagaacaaattcagccaagaaaatattcctaacgataacacagaagtc
aatcaaaaacaaactataacaacagaaaaggaacagacagaaacacttgcatcaaacttc
gccacatgcgaacattgtggaaaagaactgcctaaacctaatctagagcttcacaccatg
cactgtcgaagagtagcagaactaaaaggaaaactacaagcagcaaacgctccaagagag
aaagtgcaagcaccccctaagcaagcatcatcaaggcaagagaacaaaagacgtccaaaa
agcggaaaaaagaaacaaggcggtagaaatctagatgaaaaagaggatgggaatgatgac
tttgatgcaatgcttgcacgcgtggtgaaagaagaccatagctgccattacgagagatgt
aagaatagcgtggccacggttggtcagttctgtacctactgccgtaagttgtactgcctg
agtcaccacatgcctgaggtgcacggctgcggggaggacgctcacatggaggcacgagcc
agactgtccaaggacacgattgtggaaggtaagctgtatgcaggtgcacagaagaagctg
aaacctgagaagagagcctatctacagaggaaactggacaagaaactctcaggcatggag
gagaaaaggcaacccaagaggccatctgaaaaataa
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