Branchiostoma floridae (Florida lancelet): 118405717
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Entry
118405717 CDS
T01074
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118405717
09123 Folding, sorting and degradation
03018 RNA degradation
118405717
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118405717
03041 Spliceosome [BR:
bfo03041
]
118405717
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118405717
mRNA degradation factors
5'-3' decay
Lsm complex
118405717
Spliceosome [BR:
bfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118405717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Mlf1IP
Motif
Other DBs
NCBI-GeneID:
118405717
NCBI-ProteinID:
XP_035661275
UniProt:
C3YYI6
LinkDB
All DBs
Position
18:complement(9032603..9035878)
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AA seq
87 aa
AA seq
DB search
MASNPSHLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFENTSEGR
RITKLDQILLNGNNITMLIPGGEGPEA
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaatccctcacatcttttgccgctagaactggtagacaagtgtatcggctca
cgcatccacatcgtcatgaagagtgacaaggaaatcgtggggactttgctggggttcgac
gactttgtcaacatggttttggaggatgtgacagaattcgagaacacatcagaaggaaga
agaatcacaaagctggatcaaatcttgctgaatgggaacaacatcactatgctcattcca
ggaggagagggaccagaggcatag
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