Branchiostoma floridae (Florida lancelet): 118406097
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Entry
118406097 CDS
T01074
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118406097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118406097
Membrane trafficking [BR:
bfo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118406097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
TPR_VPS8_2
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
Beta-prop_WDR5
zf_RING_Vps8_fungal
Beta-prop_WDR3_1st
Beta-prop_THOC3
WDR55
EIF3I
zf-RING_11
WD40_Prp19
ANAPC4_WD40
Beta-prop_EML
zf-RING_5
Beta-prop_NWD2_C
TPR_LAA1_C
Prok-RING_1
Beta-prop_HPS5
Beta-prop_WDR36-Utp21_2nd
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
118406097
NCBI-ProteinID:
XP_035661853
UniProt:
A0A9J7KJ44
LinkDB
All DBs
Position
18:complement(3634787..3679349)
Genome browser
AA seq
1432 aa
AA seq
DB search
MAEGKQGEAQGLSEGLGLDEMEQLDDSEFDLPEVVAPPSLESILNEPDDDSFNLDEQNLD
IFQDASGETSSLVSLESLASDKPLAPKKKAHVQYASHGSILRHVVLKGVSAQVMSAADRV
DAGMPTAMAVSHLVAIGSSHGLILVFDPKQVLKWCLGSTAVGAQYGAVSALSINHDCTRL
LSGFAKGQITMWDLTTGKLLRTITDAHPPGTAVLHIKFTDDPTLAVCCDSGGSVFELSFK
RLMGMRTCESRCLFSGARGEVTAIEPLLATESVQDHPMKEVSLLAMASLSKMLIVSLKPH
LKVLFAHPLKGEPTTLPVLAWQFVMIQITDTTRIVDPVLAFGRGNKLFFFQVSYQEDEIK
FSALQKMELQYVIIAVTWVNSRTLVLVDAYEKVHVLDVRTEEELEVIDISDVQLVYASSF
FKSLATGGNVSKALALAGERACYNSVVSFSNQLLFLGTKSIHVMTIRTWMERIDLLVKQN
KYIEALSMAESFYLGRARAVVGLHGGLDRRTQIIADKMLDLLLTYVDVSMTTQCPASGKI
EVLVQHYQTVVPVCVDYCLLLGKRNPTLMKDILFGGIYDRFCQDPIARGVFLECLEPYIL
NDNLRSVTPQVMKDFMEHYQHKGLLQNIEACIVHMDVANLDVHQVVVMCWLHGLYDALIY
IYNKGMQDYITPLEELLRVLQSAIKSNKQLTDDQTSLAARQKDRLFKLKLPKSKKQLIKL
GNKLLVYISCCLAGRAYPLGDIPPNLVDTVKSEVFKCVTVLHTKDGTEGEQTYPYLRTLV
QFDTREFLNVLALAFEEPEFNTEEGMRQRQRIVDILLQVMVESVGFTPTQVGCLFTFLAR
QMARHENSILVNRLLFEQVLEFLASPEDDSRHEERQQALLELLNAGGLQQVDEEKLLSLA
ENARFYRVCELLYEKRRDFDKILACYLRDAARRQQVFSFIHTVMTAYGYSNEERNAVHRE
AMTQLEDLVSINSKKTAQLVITDFAHSLTEIVSKLDPQPVVLYDFLQGLFDTKEQVMMKD
PVSTEPSVTEKYIDLMCRYNPQGVMAFLKNNDTYRLEETLQICRKHKSLEATAYLLEKAG
DVQGAFNIMLETLVSKVKVLNQVMLSDSANTPTQDSQTQVAVSSVQTNLLVIIQILQRNS
GKMQEEEREGLWFPLMEVMLSPQRKHRDSLSQEQIQAYKDLTRHVLNSMMGYIALPSILQ
KIMQDPAYNTGKFGEIRELLLGMLDTYNYEQTLLKTTNSLLSHDLHWSLCNLKAAVNKGL
VPRQEDCGVCGQHFSITEEQDSVIVFSCGHAYHTSCLQSVGCCHMIEGTPHWSCSLCNVA
RREAKTGRGRTLSWSSATAASKQVEPLPSGAVSQPRSHGDALLSPQQELSYSQLQKSFKG
PSRLAILAELKRAAKYEDSGKPQDQKKIFSSSSSILQNENFQLKVAAPPVIE
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagggaagcaaggcgaagcccaagggctgtccgagggtctcgggcttgacgag
atggagcagttggacgacagcgagtttgacctcccagaggtcgttgccccgccatcgctg
gagagcatcctaaatgagcccgatgacgacagtttcaacttggacgagcaaaacctcgac
atctttcaagatgcgagcggcgaaacttcctcattggtcagcctggagtcgctggcctcg
gacaaaccccttgcgcccaaaaagaaggctcacgtccagtacgccagccacggttctatc
ctacgccatgtcgtgttaaagggcgtgtcggcgcaagtcatgtcggctgctgacagggta
gacgcgggcatgcctaccgccatggcggtctcacacctggttgctattggatcatctcat
ggtctcatcctggtgtttgacccaaagcaggttctgaagtggtgtcttggtagtacagct
gttggtgctcagtacggggctgtatctgccctcagtatcaaccatgactgcacgagactt
ctcagtggatttgccaagggacagataacaatgtgggacctgacaacagggaagctcctg
agaacaatcactgatgcccatcctcctggaactgctgtcttacacatcaagttcacagat
gaccctacgctagctgtgtgttgtgacagcggtggatcagtcttcgagctcagctttaag
cggttgatgggcatgcggacgtgcgagtctcgttgtctgttctccggcgctcgcggcgag
gtgacggccatcgaaccgctcctggcgacagagagcgtccaggaccatccaatgaaggaa
gtcagtctgctggcaatggcttctctgtccaagatgttgatcgtgagtctgaagccccac
ctgaaggtactgttcgcccaccccctgaagggagagcccaccaccctccccgtgctggcc
tggcagttcgtcatgatacagatcacagacaccacccgcatcgtagacccggtcctggcg
tttggcaggggaaacaagctcttcttcttccaggtttcctaccaggaggatgagatcaag
ttctcagccctacagaagatggagctacagtatgtcatcattgctgtcacttgggtgaac
tccagaaccctggtactggtggatgcgtatgagaaggtgcatgtgttggatgtgcgtact
gaggaggagttagaagtgattgacatctcagacgtacagttggtctatgccagcagcttc
ttcaagtcactggctacaggaggaaacgtgagcaaggctctggccttggctggcgagcga
gcatgttacaactcagtggtcagtttcagtaaccagctgctgttcctgggcaccaagtcc
atccacgtgatgaccatccggacctggatggagcggattgacctgttggtcaagcagaac
aagtacatcgaagcactgtccatggccgagtcattctatctggggagggcacgggcagtg
gtgggtctacatgggggattggacaggaggacacagattattgcagacaagatgctggat
ttgttgctgacgtacgtcgacgtatccatgacgactcagtgccctgccagtgggaagata
gaggtcctggtacaacactaccagactgtggtacctgtgtgtgtggactactgtctgctg
ctggggaaaaggaaccccaccctgatgaaggacatactgtttggtgggatctatgaccgg
ttctgtcaggacccgatcgcccgcggagtgttcctggagtgtctggaaccctacattctc
aacgacaacctgcgttcagttactcctcaggttatgaaggacttcatggaacactaccaa
cacaagggactcctacagaacatagaggcctgtattgtgcacatggatgtggcaaatctg
gatgtgcatcaggttgtggttatgtgctggctccatggcctgtatgatgccctgatctac
atctataacaaaggcatgcaggactacatcactccactagaggagctgctcagggttcta
cagagcgccatcaagtccaacaaacagctcacagacgaccagacttctctagctgctaga
caaaaggacagacttttcaaacttaagcttccaaagagtaagaaacaactgattaagctg
ggtaacaagctcctggtgtacatcagttgttgcctcgccggacgagcgtatccactggga
gacatcccacccaatctggtcgacacggtcaagtcagaagtcttcaaatgtgtaacagta
ctacacactaaagatggcactgaaggtgagcagacctacccctacctgagaacgctggtc
cagtttgacaccagggagtttctgaacgttctggcactcgcattcgaggagccagagttc
aacactgaggaaggaatgagacagaggcagagaatagtagacatcttactacaggtgatg
gtggagagcgtaggtttcactccgacccaggtgggctgtctcttcacgttcctggcacga
cagatggcgcgacacgagaactccatcctggtgaacagacttctgtttgaacaggtgctg
gagtttctggccagtcccgaggacgacagtcggcatgaggagagacaacaagccctactg
gagctgctgaatgcgggaggcttacagcaggtggatgaggagaagctcctaagtctggcg
gagaacgctcggttctaccgcgtctgcgaactcctgtacgaaaagaggagggactttgac
aagatcttagcatgctatcttagagatgctgccagaaggcaacaagtgttctcctttatc
cacactgtgatgactgcgtatggctacagtaatgaggagaggaatgctgtacacagggag
gccatgacacaactggaggacctggtatccatcaacagtaagaagactgcccagctggtc
atcacagatttcgcccacagtctgacagagatagtgtccaaactggacccccaacctgtg
gtgctgtatgacttcctacagggactctttgataccaaggagcaagtgatgatgaaggac
ccagtatccacagagccgtctgtgacagagaagtacattgacctgatgtgtagatacaac
ccacagggtgtcatggcattcctgaagaacaacgacacctaccgactggaggaaacactg
cagatctgcagaaagcacaagtcgctggaggctacagcatacctactggagaaggcagga
gacgtccagggggcattcaacatcatgttagagacactggtcagcaaggtcaaggtgctg
aaccaagtcatgctgtctgacagcgcaaacactcctacacaggattcccagacgcaggtg
gccgtcagctccgtacagaccaacctactggtcatcattcaaatcctccagaggaactct
gggaagatgcaggaggaggagcgggagggcctgtggtttccgctgatggaggtcatgttg
tcaccacagaggaaacacagggacagtctgtcacaggaacagatacaagcctacaaggac
ctaacacggcacgtcctgaatagcatgatgggatacatcgccctcccgtccatcttacag
aagatcatgcaggacccggcctacaacaccggcaaatttggggagatccgagagctactg
ctggggatgttagatacatacaactatgaacagacgttactgaagactaccaacagcctg
ttgtcccatgacctgcactggtccctctgtaacctgaaggctgctgtaaacaaaggtctg
gtgcccagacaggaggactgtggtgtgtgtgggcaacacttctccattacagaggaacag
gactcagttatagtctttagttgtggccatgcataccacacgtcgtgccttcagtctgtt
ggttgttgtcacatgatcgaggggacgccccattggtcctgctcgctgtgtaacgtggct
cgtcgggaagcgaagacaggacgaggcagaacgctttcgtggtcaagcgcaactgcggcc
agcaaacaggttgagcccctcccatcaggagctgtcagtcagcctcgttcccatggcgac
gccctcctctccccccaacaggagctctcctactcccagctacagaagtccttcaaaggt
ccctctcgattggccatcctggcggaactgaagagggcggcaaagtacgaagactccggc
aagccacaagaccaaaagaagatcttcagtagtagttcaagcatcttacagaatgaaaac
tttcaacttaaagttgccgcccctcctgttatagaatag
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integrated database retrieval system
