Branchiostoma floridae (Florida lancelet): 118406477
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Entry
118406477 CDS
T01074
Name
(RefSeq) cartilage oligomeric matrix protein-like
KO
K04659
thrombospondin 2/3/4/5
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04145
Phagosome
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118406477
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118406477
09142 Cell motility
04820 Cytoskeleton in muscle cells
118406477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118406477
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118406477
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118406477
Membrane trafficking [BR:
bfo04131
]
Endocytosis
Phagocytosis
Opsonins
118406477
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118406477
Exosomal proteins of colorectal cancer cells
118406477
Exosomal proteins of bladder cancer cells
118406477
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118406477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
Sushi
Motif
Other DBs
NCBI-GeneID:
118406477
NCBI-ProteinID:
XP_035662425
UniProt:
A0A9J7HMR6
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All DBs
Position
19:11728384..11737827
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AA seq
608 aa
AA seq
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MWRIVFAATTLLVGAGGLRIRERPTRQSTPTSVVQCPALSASAHLTLSSSGTTFGTVVLF
TCDHGYQLFGASSTTCQADGTWSASLPSCRIMLHPYCQLDSNQDGYPDTYWSLAQLDSDQ
DGYPDVALMELWMCLGDPLLALCSRQPAACNQTDNCPWIPNSGQEDADGDGVGNACDEDA
DGDGFLNILDNCPLVTNFYQTDVDGDEVGDACDNCPTDINTDQLDTDGDGWGDACDQDSD
GDALIDSQDNCPLQLNGNQADSDGDGIGDICDNCPNVPNADQADADQNGIGEACESGIDS
DADGVPNNLDNCMMEPNSAQLDADHDGQGDACDNDDDNDTVHDDIDNCRLVPNMDQADLN
GFGIGDVCSLDFDGDGVIDADDVCPGNNVVSRTDFRNYVTVNLGVSNSNYPAPHWEFFNE
GAEITQNLNSNPGIVIGTTKFGSVDYRGTFFVNTQIDDDFMGFVFSYQSNSRFYLVSWKQ
AGDGGGGQPGVQLKLVNSTTGPSRDLALALWRAAEVQGQTKLLWEDPNKLGWSYKTAYRW
ELKHLPAVGLIRLKLYAGRQLVVDSGNVMDQSLRGGQLGVYSYSQQNVIWSNLVTKCDDT
LPPDYSQK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaattgtctttgctgcaacaacgcttcttgtaggagcgggtggcctgcggatc
cgggaacgtcctactcgacagtccactcctacatctgttgtgcaatgtccggcgctgtca
gcctcagctcacctgacccttagttccagtggcacgacatttgggaccgtggtactgttt
acctgtgaccatggataccagttgttcggtgcctccagcactacctgccaagctgacgga
acatggagtgcgtctcttccaagttgcagaataatgttacatccatactgtcaacttgac
agtaatcaagacggctatccggatacgtattggtccttggcgcaacttgacagtgatcag
gatggctatccggatgttgccttgatggaactttggatgtgtctgggtgaccccttgctc
gctttgtgttctagacaacctgctgcttgtaaccagacggataactgtccatggatccca
aacagcgggcaggaggacgccgatggagatggtgtaggaaacgcctgtgacgaggatgca
gacggcgacggtttcctgaacattttggacaactgccccttggttaccaacttctaccag
acggacgttgatggtgatgaggtgggtgatgcatgtgacaactgtcccacggacatcaac
actgaccagctggacacagacggtgacgggtggggggacgcgtgtgatcaggacagcgat
ggggacgcactcatcgacagccaggacaactgcccactccagctcaatggcaaccaggct
gattctgacggagatggtattggagatatttgcgacaactgtccaaatgtaccaaacgcg
gatcaggccgatgcagatcaaaatggaattggagaagcatgtgaaagtggaattgacagc
gatgctgatggtgttcctaacaatctggacaattgcatgatggagccaaacagtgcacaa
cttgacgcagaccatgatggccaaggagatgcgtgtgacaatgacgatgacaacgacacc
gtgcatgatgatattgacaactgccgtctcgtgcctaatatggaccaggctgacttaaac
ggttttggtatcggagatgtctgcagtcttgacttcgacggggacggcgtcatagacgct
gatgacgtgtgtccaggaaacaacgtggtcagcaggacagacttcaggaactacgtcacg
gtcaaccttggagtatccaactctaactacccggcaccgcattgggagtttttcaacgag
ggtgcagagataacacagaatctgaacagcaaccctggaattgttattggcacgacaaag
ttcggcagtgttgactaccgcggaaccttctttgtgaacacgcagattgatgacgacttc
atggggttcgtcttcagctatcagagcaactcccgcttctacctggtgtcatggaaacag
gcaggggacggcggtggtgggcaaccaggcgttcagctaaagctggtgaactcaacgact
ggtcctagtcgggatctggcattggctttgtggagggcagccgaggtccagggacagacg
aagctgttgtgggaagatccgaacaagctcggctggagttacaagactgcttaccgctgg
gaactgaagcatcttcctgccgtcggattgatcagactgaagctgtacgcaggccggcag
cttgtagtggactccggtaacgtcatggaccagtccctccggggcggtcagcttggagtg
tacagttactcacaacagaacgtcatctggtccaatctcgtcaccaagtgcgacgacacc
ttgcctcctgactacagtcagaagtag
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