Branchiostoma floridae (Florida lancelet): 118406584
Help
Entry
118406584 CDS
T01074
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118406584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118406584
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118406584
mRNA degradation factors
5'-3' decay
Decapping complex
118406584
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Ribosomal_L11_N
DUF5799
Motif
Other DBs
NCBI-GeneID:
118406584
NCBI-ProteinID:
XP_035662599
UniProt:
A0A9J7HQI3
LinkDB
All DBs
Position
19
Genome browser
AA seq
837 aa
AA seq
DB search
MADTFFGFDADIPGEDDLGLSAEAELEEDFDRLNDDTFGSGAIDDGDWETNHKKLAELEE
LRKRDGGSQAIPFSQDALGQVRGQGLAEDMERSINQLMLEDEFDDPAIMSIRKGPLSPDR
YNTASPPALLQAETLISPGRQSIWSSPSRSALMGNKVTILQRPSEPAEPRTLPMEVGISS
AFQDSAIVSAVPRKSSPPLVPSSARTLEEIERDLRGSGNRAAPSPPLGRAISPGGVSFAS
PQGNHHPRGGLGMHPIGTPPRTNHMPPGMPMQGPGGMPLQRPLQSPHSLPPGPHPPPPGP
HPPPGFHNARPGMSTPPPQHPLPRGHPTPPMRPPFPRTPLRPGMVGPMGFSPHMMRGGER
MSPHMMRGGDRVSSPGPGPGPGLMPFMPRSPFQHGRMPPPPHQGPPGGSPMNDTALLHPY
HRQILQQREQQFRQRQRGGHHPGGRGMPGPGPHGNRNWRDGPGGFHGGEPRDEYAGLMTQ
REKEWVVKIQMLQLQSSNPMMEDYYYQAYMSKKMAQEAERPPSQGTSGEGDGPGSSPPKL
ITPQLKQEHKTYKPAHFEHTLGRVSVSSVNNPRKLIDFAAHAEEDHDMKSGIGKDHRRRE
LLLLIEKTYSVMLELEDIEKKVMSVSEEERRSLLEARIGMVHQIYNNFGLTADGSNDDQF
LHWMCIRKGKSLVGRVLPILPRDNAATVVTCVLRNLAILIRKDTQDEMLPHLSSSVSHVI
RNSHLDHLTSFLQAIIQGNDGANLTAAVQNKFGMSVLCSLLTRAETLFNTDVDTPLEEEA
LWGDLVGQVCKELLSVPEANLASPVKPPTGITNHVSRFVDKQTSTALEQRLRSLHGV
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcagacacgtttttcggcttcgacgcagacatacccggggaagatgacctcgggttg
tcagctgaggcagagttggaggaagactttgaccgactgaatgatgatacctttggatcc
ggggccattgatgatggggactgggagacaaatcacaagaagctagcagaactcgaggag
ctcaggaagagagatggcggcagccaggccatccccttttcccaggatgccctggggcag
gtcagaggtcagggcctggcggaggacatggagcgcagcatcaatcagctgatgctggag
gatgagttcgatgaccccgccatcatgagcatacggaaagggccgctgtctccggaccgg
tacaacactgcatcaccacctgcactgctgcaggcggaaacgttgatttctcccggacga
cagagtatctggagctcgccgtcgcgcagtgccctgatgggaaacaaggtcacgatcctg
cagcgcccgtccgagcccgccgagccgcgtacgcttcccatggaggtagggatttcatcc
gctttccaggactctgcgattgtctctgctgttccaagaaagtcatcccctcccctggtg
ccctcatctgcgcgcacgctcgaggaaatagaacgcgacctccgggggtcgggaaacagg
gctgcaccttccccacccctggggagagccatctcccccgggggtgtgtccttcgcttcc
ccgcagggtaaccatcaccccaggggtggactcggtatgcaccccataggaacccctccc
cggaccaatcacatgcctccagggatgcccatgcagggcccaggtggcatgcctttacag
cgaccacttcagtctccccactcccttccccctggcccccacccccctcctcctggcccc
cacccccctccaggattccacaacgcccgacccggaatgtccaccccaccccctcaacac
cccctccctcgcggccaccccacccctcccatgcgcccgcccttccccagaacacccctc
cgtcccggaatggttggtcccatggggttctccccccacatgatgagaggaggagagcgg
atgtcaccacacatgatgagagggggggacagggtgtcgtcccctggtccgggccctggc
cctgggctcatgccatttatgccaagatcacccttccaacatggtagaatgccccctccc
ccccaccagggcccccctggcggctcccctatgaatgacacggcgctgttacacccctac
catcggcagatcctacagcagagggaacagcagttcaggcagaggcagagaggtggccac
caccccggcgggcggggcatgcccggacctggtccccatggtaaccggaactggcgtgac
gggccgggagggttccatggcggggagcctcgtgacgagtacgcgggcctgatgactcag
cgtgagaaggagtgggtggtgaagatccagatgttacagctacagagcagcaaccccatg
atggaggactactactatcaggcctacatgtctaagaagatggcccaggaggcagagaga
cccccctcccagggtaccagtggggagggggatggacctggctccagccccccgaaactc
atcaccccccaacttaaacaagaacacaagacttataaaccagcccatttcgagcacacc
ctcgggcgagtgtccgtctcgagcgtgaacaaccctcggaagctgatcgacttcgcggcc
cacgcagaggaggaccacgacatgaagtctggtatcgggaaggaccaccggcgccgggag
ctgctgctgctgatagagaaaacttactctgtcatgctggagctagaggacatcgagaaa
aaagtcatgagtgtttctgaggaagaaaggagaagtctcctagaggccaggatagggatg
gttcaccagatctacaacaactttgggcttacagctgatggaagcaatgatgaccagttt
ctccactggatgtgtatccggaaggggaagtctctggtggggcgcgtccttcccatcctg
ccccgggacaacgcagcgaccgtggtcacctgtgtgctacggaacctcgctatccttatt
aggaaggacactcaggatgagatgctccctcacctgtcgtcctcggtcagtcatgtgatc
aggaactcccatctggaccaccttacctcgttcctacaggccatcatacaggggaatgat
ggggcaaaccttactgcagctgtacagaacaagtttggcatgtctgtcctgtgttccctg
ctgaccagagcagagaccctgtttaacacagatgtggacacgcccttggaggaagaggct
ctatggggagaccttgttgggcaggtgtgtaaagagctcctgtctgtaccagaagctaac
ctggcctcgcctgtcaaacctcccaccggtatcaccaaccacgtgtcacgctttgtggac
aaacagacgtcaacagcgctggaacaaaggctcaggtctctacacggtgtttga
DBGET
integrated database retrieval system
