Branchiostoma floridae (Florida lancelet): 118406872
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Entry
118406872 CDS
T01074
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118406872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118406872
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118406872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
Cullin_binding
TPR_16
Motif
Other DBs
NCBI-GeneID:
118406872
NCBI-ProteinID:
XP_035663153
UniProt:
A0A9J7HPI7
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Position
19:8129154..8149664
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AA seq
719 aa
AA seq
DB search
MMSGAGDGGLGKDQGYIPDRVKKAEKRIEVNAFDVDAWSVLIREAQNQNIDKARNTYERL
VGQFQTAGRYWKIYIEAEMKARNYERVEKLFQRCLMKVLNIDLWKCYLNYVRETKGSLPS
YREKMAQAYDFALDKMGMDIMSYQIWSDYISFLKGVEAVGSYAENQRITAVRRVYQRGCV
NPMVNIEQLWREYNQYETGINPIIAKKMIEDRSRDYMNARRVAKEYEAVTRGLNRNMPSI
PPTGTPDEVKQVDLWKKYISWEKGNPLRTEDHAVIAKRVIFAYEQCMLCLGHRPDIWYEA
AKYLEESSKLLSEKGDLNAGKMFSDEAAAMYERAISTLLKKNMMLYFSYADFEENRMKHQ
KVHSIYNKLLGIDEIDPTLGYIQYMKFARRAEGIKSARSIFKRAREDNRSKYHVYVSAAL
MEYFCSKDKNIACKIFELGLKKYSDSADYILQYLDFLSHLNEDNNTRVLFERVLTSGALP
VDKQGEIWAKFLEFECSIGDLSSVLKVEKRRRDIFKEEFEDRETCLLVDRYKYLDLFPLS
TSELKAVGFKLRPTTADLVSGSEVPAAALPEIDEFKKPEYPKPATDQMLPFKPRALAPPG
MHPVPGGVFPMPLPAASLLNLMPPPTCFHGPFVNIDDLVKTFETCALPEDPSQLLDKMCN
GEETSNPKLFPIPLQNSDSAKKGQKRPAENEAKEESDDEDNVAPPAHDIYRSRQQKRVR
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgatgtctggagcgggcgatggaggactgggaaaggatcagggatatatccctgaccga
gtcaagaaggcggagaagagaatcgaagtgaacgcgtttgatgtagatgcatggagtgta
ttgatacgagaggcccagaaccagaatatcgacaaagcgcggaacacgtacgagcgactg
gtgggccagtttcagacggcaggccgctactggaagatttacattgaggctgagatgaag
gccagaaactatgaaagagttgaaaagttgttccagcggtgtctaatgaaggtgttgaac
atcgacctgtggaagtgttacctgaactatgtcagggagaccaagggcagtctgccctct
tacagagagaagatggctcaggcatatgactttgctctggacaagatgggcatggacatt
atgtcttaccagatatggagtgactacatttccttcctgaaaggagtggaggcagtaggt
tcgtacgcagagaaccagcgtatcacagcagtacggagggtgtatcagcggggatgtgtc
aaccccatggtcaacatagaacagctgtggagagagtacaaccaatatgagactggcatc
aaccccatcatagccaagaagatgatagaagatcgcagcagggactacatgaacgccaga
cgggtggcaaaggaatatgaagctgtgaccagaggtctgaacagaaacatgccgtccatc
ccacccactggtactcctgatgaagtcaaacaggttgacctctggaagaagtacatcagt
tgggagaaaggcaacccactgagaacagaggaccacgctgtcatcgcaaagagagtaata
tttgcgtacgagcagtgcatgctgtgcctgggccatcgccctgacatctggtatgaggct
gccaaatacctggaggagtccagcaaactgctgtctgagaagggggacctgaatgccgga
aagatgttcagtgacgaggcagcagccatgtatgagagagccatctccactctactcaag
aagaacatgatgctctacttctcctacgctgactttgaagagaaccgcatgaagcaccag
aaagtccattccatctacaacaagctgctgggtattgatgagatagacccaacactgggt
tacatccagtacatgaagtttgccaggagagcggaaggcatcaagtcagcccggagtatc
ttcaagagagcgagagaagacaacaggtccaagtaccacgtgtatgtgtcagctgcactc
atggagtacttctgtagtaaggataagaacatagcctgtaagatcttcgagctgggtctg
aagaagtacagtgacagtgctgactacatcctacagtacctggacttcttgtcgcatctt
aatgaggacaacaacacccgggttctgtttgaaagggtgctgacttcaggggctcttcct
gtggacaaacaaggtgagatctgggccaagttcctggagtttgaatgcagtattggtgac
ctttcgtctgtcctgaaggtcgaaaaaagacggagagacatctttaaagaggagtttgaa
gatcgtgagacgtgtctcctggtggacagatacaagtacctggacctgttccccctgtct
acgtcagaactcaaggctgtgggcttcaaactacgacctaccacagctgacctagtgtcg
ggttcggaggtgcctgcagctgccctaccagagatagacgagttcaagaaacccgagtac
cccaaacctgctactgaccagatgttacccttcaaacccagggctctggctcctcctggg
atgcaccctgttcctggtggtgtgttccccatgcctctcccagcagcctctctgctcaac
ctcatgcccccacctacctgcttccatggcccctttgttaatattgatgacttggtgaag
acctttgaaacctgtgcattgccagaagatccctctcagcttttagacaagatgtgcaat
ggtgaggaaacttccaatcctaagttgttcccgatccccctccaaaattccgactctgca
aagaaaggccagaaacgtcccgcggaaaacgaagcaaaggaagaatcggatgatgaggac
aacgtagcgccgcccgcacacgatatctaccgcagtcgacaacagaaacgtgtcagatag
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