Branchiostoma floridae (Florida lancelet): 118407289
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Entry
118407289 CDS
T01074
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118407289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118407289
Spliceosome [BR:
bfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118407289
Complex C
U5 SnRNP specific factors
118407289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
118407289
NCBI-ProteinID:
XP_035663639
UniProt:
A0A9J7HPV5
LinkDB
All DBs
Position
Unknown
AA seq
2274 aa
AA seq
DB search
MAAYSFMPGGHGVPDFMSEEKLQEKARKWQQLQSKRYAEKRKFGFVDAQKEEMPPEHVRK
IIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVSVIYHITGAITF
VNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPL
EPIQMEMDNEEDSEVMTWFYDHKPLSDTKFVNGTTYKLWRLTLPIMSTLYRLANQLLTDL
VDENYFYLFDLKSFFTSKALNQAIPGGPKFEPLIRDSNLQDEDWNEFNDINKIIIRQPIR
TEYKIAFPYLYNNLPYQVHLSWYHIPNVVFIKTEDPDLPAFYFDPLINPIAHRHSVKSWE
PLPDDDEEFELPEFVQPFLQDSPLYTDNTANGIALLWAPRPFHLRSGRTRRAVDIPLVKC
WYREHCPAGMPVKVRVSYQKLLKYYVLNALKHKPPKAQKKRYLFRSFKATKFFQSTTLDW
VEAGLQVCRPGYNMLNLLIHRKNLNYLHLDYHFNLKPVKTLTQQERKKSRFGNAFHLCRE
ILRLTKLIIDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLK
HLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFMRGITPLLERWLGNLLSRQFEGRHSKGVA
KTVTKQRVESHFDLELRASVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVP
GLPTPIENMILRYVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQE
RQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEA
YSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVY
DVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETG
EGECNVMMESQFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYG
IIRGLQFASFIVQYYGLVMDLLMLGLQRASEMAGPPQMPNDFLTYQDVATETAHPVRLFS
RYIDRIHVFFRFTAEEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRLMKHDVNL
GRAVFWEMKNRLPRSVTTIVWENSFVSVYSKDNPNLLFNMCGFECRILPKCRTTYEEFTH
RDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIG
LMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLS
MGHVLIPQSDLRWSKQTDVGITHFRSGMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEY
ALKRQEANAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLK
QNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGF
EESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTL
KISLIQIFRAHLWQKIHESVVMDLCQCWDTMDSTTTQKYWLDVQLRWGDYDSHDIERYAR
AKFLDYTTDNMSIYPSPTGLMIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALY
VLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTK
PINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQI
IVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYD
DWLKTISSYTAFSRLILILRALHVNNDRTKVVLKPDKTTITEPHHIWPTLSDEEWIKVEV
QLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTA
TTTRTVNKHGDEIITSTLSNYERATFSSKTEWRVRAISATNLHLRTNHIYVSSDDIKETG
YTYILPKNILKKFIVISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPN
QLPQHEYLKEMEPLGWVHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPG
SCSLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPNQGSWNY
NFMGVRHDPNMHFELQLANPKEFYHEVHRPSHFMNFASIEEGEVMGTDREDLFA
NT seq
6825 nt
NT seq
+upstream
nt +downstream
nt
atggcagcttacagcttcatgcccggcggacacggagtcccggacttcatgtcggaggag
aaactacaggagaaagcacggaaatggcagcagctccagtccaaacgctacgccgagaag
cggaaattcgggtttgtggacgcccagaaggaggagatgccaccggaacacgtgcggaag
atcatccgcgaccacggagacatgaccaaccgcaagttccgccatgacaagagagtctac
ctgggtgccctgaagtacatgccccatgcagtgctgaagttgctagagaacatgcccatg
ccctgggaacagatccgagatgtcagcgtgatctaccacatcactggtgccatcaccttc
gtcaatgagatcccctgggtcatcgaacctgtctacatcgcacagtggggcaccatgtgg
atcatgatgcgtcgggagaagcgagatcggcgccacttcaagcggatgcgcttcccgccc
ttcgacgacgaggagcccccgctggactacgcggacaacgttctggacgtggagccgctc
gagcccatccagatggagatggacaacgaggaggactccgaggtcatgacctggttctac
gaccacaagcctctgtctgacacaaagtttgtaaacggtacgacgtacaaactgtggcgg
ctgactctccccatcatgtccacgctgtaccgcctagctaaccagctgctcacagacctg
gttgatgagaactatttctacctgtttgacctgaagtcgttcttcacctcgaaggccctg
aaccaggccatcccgggcggacccaagttcgaacccctcatcagggacagcaacctgcaa
gatgaggattggaacgagttcaatgacatcaacaagatcatcatccgccagccaatccgc
acagagtacaagatcgccttcccctacctgtacaacaacctgccctaccaggtccacctc
tcatggtaccacattcccaacgtggtgtttatcaagacagaggacccagatctgccagcc
ttctacttcgaccctctcatcaaccccatcgcacacaggcactccgtcaagtcctgggag
ccgctgccagacgatgacgaggagtttgagctgccagagttcgttcagccgttcctgcag
gacagtccgctgtacaccgacaacacggccaacggcatcgccctgctatgggcgccgcga
ccattccacctgcgctctggacgcacccgccgagccgtggacatcccgctggtcaagtgc
tggtaccgtgagcactgcccagctggcatgcctgtgaaggttcgagtctcgtaccagaaa
ctgctgaagtactacgtactcaacgccctgaaacacaagccccccaaggcgcagaagaaa
cggtacctgttccgttccttcaaggcgacgaagttcttccagtcgacgacgctagactgg
gtggaggcaggtctgcaggtgtgccgaccggggtacaacatgctgaacctgctcatccat
cgcaagaacctcaattacctgcacttggactaccacttcaacctcaaacctgtcaagact
ctcacacaacaggagagaaagaagtcacggtttggtaacgcgttccacttgtgtcgtgag
atcctgcgcctgaccaagctcatcatcgactcccacgtgcagtatcgccttggcaacgtc
gacgcattccagttgtctgacggtctgcagtacatcttcgcccacgtaggccagctaacg
ggcatgtacaggtacaagtacaaactgatgaggcagatccggatgtgtaaggacctcaag
catctcatctactacaggttcaacaccggtccagtaggaaaaggccccggttgcggcttc
tgggcgccgggctggcgtgtgtggatattcttcatgcgcgggatcacacctctgctggag
cgctggctcgggaacctgctctcccgacagttcgagggccgacactccaagggcgtggcc
aagaccgtcaccaagcaacgcgtggagagccacttcgatctcgagctgagagcttcggta
atgcatgacatcctggacatgatgccggaggggatcaaacagaacaaggctcggaccatc
ctgcagcatctgagcgaggcctggaggtgctggaaggctaacatcccatggaaggttcct
ggtttgcccacaccgatagagaacatgattctgcgttacgtgaagatgaaggccgactgg
tggaccaacaccgcccactacaaccgcgagcgtatccggcgcggtgcaaccgtcgacaaa
actgtctgcaagaagaacctgggccgtctgaccaggctgtacctgaaggctgaacaggag
agacaacacaactatcttaaggacggcccctacatcacagctgaggaggccgtcgccatc
tacacgacgacggtccattggctggagagccggcgcttctcgcccatcccgttcccgccg
ctgtcctacaaacacgacaccaaactgctcatcctggcgctcgagaggctcaaggaggca
tacagtgtgaagagccgcctgaaccagtcccagcgagaggagcttggtctgatcgagcag
gcgtacgacaaccctcacgaggcgctcagccgtatcaaacgtcatcttcttacacagagg
gccttcaaggaggtgggaattgagtttatggacctgtacagccacctgatccccgtgtac
gatgtggagccgctagagaagatcacggatgcgtacctggaccagtacctgtggtacgag
gccgacaagaggcgcctcttcccaccgtggatcaaacctgccgacacagaaccgccaccc
ctgctcgtgtacaagtggtgccaaggaataaacaacctgcaggatgtctgggagacagga
gagggagagtgtaacgtgatgatggagtctcagtttgagaaaatgtacgagaagattgat
ctgacgctgctgaacagactgctgcgtctcatcgtggaccacaacatcgctgattacatg
acagccaagaacaacgtcgtcatcaactacaaggacatgaaccacaccaactcgtacggg
atcatccgcggtctccagttcgcctccttcattgtgcagtattacgggctggtcatggac
ctgctgatgttgggcctgcagagagccagcgagatggccgggccgccccagatgcccaac
gacttccttacttaccaggatgttgccacggagacagcccatccagtgcgcctgttctca
cgctacatcgaccgtatccacgtgttcttccgcttcacggctgaggaggcgcgggacctg
atccagcgctacctgacggagcaccccgaccccaacaacgagaacatcgtcggctacaac
aacaagaagtgctggccgcgcgacgccaggatgaggctcatgaagcacgacgtcaacctc
ggtcgcgcggtgttctgggagatgaagaaccgcctgccgcggtcggtgacgacgatcgtc
tgggaaaacagcttcgtgtcggtgtacagcaaggacaaccccaacctgctcttcaacatg
tgcggcttcgagtgccgcatcctgcccaagtgccgcacaacctacgaggagttcacacac
cgcgacggtgtctggaacctgcagaacgaggtgaccaaggagcgcacagcccagtgtttc
ctgcgggtagacgacgagtcgatgcagcggttccacaaccgcgtgcgccagatcctcatg
gcctcagggtcaacgaccttcaccaagatcgtcaacaagtggaacaccgccctcatcggg
ctcatgacctacttccgcgaagctgtggtgaacacccaagagctcctcgacctccttgtg
aagtgcgagaacaagatccagacccgtatcaagatcgggctcaactccaagatgccctcg
cggttcccgccggtggtgttctacacgcccaaggagctagggggcctcgggatgctgtcc
atgggccacgtgctcatcccccagtccgacctgcgctggtccaagcagacggacgtcggc
atcacgcatttccgctccggcatgagccacgacgaggaccagctcatccccaacttgtac
aggtacatccagccgtgggagagcgagtttatcgactcccagcgcgtctgggcagagtac
gccctgaaacggcaggaggcaaatgctcagaaccggcgcctcacgctcgaggacctggaa
gactcgtgggaccgcgggattccccgcatcaacacgctgttccagaaggaccgacacacc
ctcgcctacgacaagggctggagggtacgcacggacttcaagcagtatcaggtgctgaaa
cagaatccgttctggtggacacaccagaggcatgatgggaagctgtggaacctgaacaac
taccgcacggacatgatccaggctctgggtggcgtggagggcatcttagaacacacgctg
ttcaagggcacatacttcccgacctgggagggtctgttctgggagaaggcctcgggtttc
gaggagtcgatgaagtacaagaagctgaccaacgcgcagagatccggtctcaaccagatc
cccaacaggcggttcacactctggtggtctccaaccatcaacagggccaacgtgtatgtg
ggattccaggtgcagctggatctgacagggatcttcatgcacggcaagatccccacactg
aagatctccctgatccagatcttccgcgctcacttgtggcagaagatccacgagagcgtg
gtcatggatctgtgccagtgttgggatacgatggacagcacaacaacgcagaagtactgg
ctggacgtgcagctgcggtggggcgactacgattcccacgacatcgagcgctacgcccgc
gccaagttcctggactacacgacggataacatgagtatctacccctcaccgacgggcctg
atgatcgccatcgacctggcgtacaacctgcacagcgcatacgggaactggttcccgggg
tgcaagccgctgatccagcaggccatggccaagatcatgaaggccaacccggcgctgtac
gtgctcagggaacggatacggaagggcctccagttgtactcctcagaacccacggagccg
tatctctcctcccagaactacggagaactcttctccaaccagatcatctggttcgtggac
gacaccaacgtctacagggtcaccattcataagacgtttgaaggaaacttgacgacgaag
cccatcaacggagccatcttcatcttcaaccctcgcacgggacaactcttcctcaagatc
atccacacctccgtgtgggcggggcagaaacgtcttgggcagctggccaagtggaagacg
gcagaagaagtggccgccctgatccgatccctgccggtggaggagcagcccaaacagatc
atcgtgaccaggaagggcatgttggatccgctcgaggtccatctgctggacttccccaac
attgtgatcaagggcagcgaactacagctgccgttccaggcctgcctcaaggtggagaag
tttggggacctgattctgaaggccacggaacctcagatggttctgtttaatctgtatgac
gactggctcaaaaccatctcatcttatacggcattctctcgtctgatcctgatcctgaga
gcgctgcacgtgaacaacgaccgcaccaaggtggttctgaaaccggacaagaccaccatc
accgagccgcaccacatctggcccaccctgagcgacgaggagtggatcaaggttgaggtt
cagctgaaggacctgatcctggcagactacgggaagaagaacaacgtgaacgtggcgtcg
ctcacgcagtccgaaatccgtgacatcatcctgggcatggagatctcggctccatcacag
cagcggcaacagatcgcagagatcgagaaacagactaaggagcagtcccagctcacggcc
acgaccacgcggacagtcaacaagcacggcgacgagatcatcacatcgaccctcagcaac
tatgagcgcgccaccttctcctccaagacggagtggcgtgtccgcgcgatttccgccacg
aaccttcacctacgcacgaaccacatctacgtgtcttcagacgacatcaaggagaccgga
tacacctacatcctgcccaagaacatcctaaagaagttcatcgtcatctcagacttgaga
gctcagatcgcaggttacctgtacggagtgagcccacctgataacccacaggtgaaggag
atcaggtgtattgtcatggttcctcagtggggaactcaccagacggtgcacctgcccaac
cagctgcctcagcatgagtacctgaaggagatggaacctctgggctgggtgcacacgcag
ccaaacgagtctccccagctctccccacaggatgtcaccacccacgccaaaatcatggcc
gacaacccgtcatgggacggagagaaaaccatcatcatcacatgcagtttcacgccaggc
tcctgctccctgacggcctacaagctgacgccgagcggttacgagtgggggaggcagaac
acggacaaggggaacaacccgaagggctacctgccgtctcactacgagcgtgttcagatg
ctcctgtctgatcgcttcctgggattcttcatggtccccaaccagggctcctggaactac
aacttcatgggcgtgcggcacgaccccaacatgcactttgaactccagctggcaaaccca
aaggagttctaccacgaggtgcaccgaccttcgcacttcatgaactttgcctccatcgag
gagggcgaggtcatgggcaccgacagggaggatctctttgcgtga
DBGET
integrated database retrieval system
