Branchiostoma floridae (Florida lancelet): 118409255
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Entry
118409255 CDS
T01074
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118409255
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118409255
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118409255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
Ank_2
HA2_N
Ank_5
Ank
ATPase
AAA_19
AAA_22
nSTAND3
Ank_4
PhoH
FtsK_SpoIIIE
Sigma54_activat
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
118409255
NCBI-ProteinID:
XP_035666024
UniProt:
A0A9J7HUA6
LinkDB
All DBs
Position
2:23525695..23548480
Genome browser
AA seq
1725 aa
AA seq
DB search
MASRGSGRPPPRPRSRNSPPVGQQGMGERMHQGGGNRSGMSRPGSASPQPQGGEGGKRGG
RPPPLHKREICIDEEVKIAVRIAVEKFRYNESQKEYEFPSSLTSVERAFIHRYCQSLGIK
TKSRGKGSNRYLTIFKKDSRTMGLGTATFSLCRSARHHTHTLLQRFPITGRERQELMPRT
ERGIGEGHSRDGNRASGLNGRLNNGIQQVPPPRSQSEYDNFRRTLPVAVLQEVIVKTVNE
NQVVLIAGETGSGKTTQVPQFILDDAQRSNRPCRIICTQPRRISALTVAERVASERGEKI
GQTVGYQIRLESRVSPRTLLTFCTNGVLLRTLMGGDSALTTITHVIVDEIHERDRFSDFL
LIKLREMLGYFKGLKVVLMSATLNTELFQQYFGSCPIINVSGNLFDVTEFFLEDVLRSTN
YSNQKMQKYKKERGQLEQQQSSLDQWYQQSGTPAPGVVSPKEQLTQHLAEKDLDTAQQED
YEVSDLQDIPQERDVSEMEPWLIQEMDKCIMTAWLNNDADAYVQLFHLIMSENVSVDYRH
SETCSTTLMIAAGRGNMAAVEQLLALGANINLRAPNGLTALDWARKFGQTDTVEVLEAYI
ASSEITVSDDTLLVSESSQLSTEDRELLKAYHQSFDDEHVDLDLILCLLFNICSSQEEGA
ILVFLPGYEEIVTLRDAIMWDDKRFSDTSRYQVYTLHSAMQSGDQKRVFQQAPAGVRKII
LSTNIAETSVTINDVVFVIDSGKVKEKSFDALTSVSMLKSVWVSKASAQQRKGRAGRCRP
GVCFHLFSRVRYESLQEYQDPELLRTPLQELCLQTKLLSAPNTPIAEFLAKAPEPPAFLV
LRNAVQLLKTVDALDMWEDLTELGHHMVDLPIEPRLAKMVLYSVVLKCLDPVLTIACALA
YRDPFILPNQPSQKRAAVYCRKKFSAGAYSDHMALLRAFQGWQKAKSDGWERSFCEKNFL
CQATMEMIFGMRTQLLGQLRASGFVRARGGGDIRDLNTNSENWAVIKAALCAGSYPNMVR
VDRENLWLTTQMEKSVRFHNTSVLGQAANPKVTVALSHAQSVTKLPTDWLVYEEISRAHR
YAYVRCCTLMSPVTVAIFAGPSRLPLDALTDPNAPDNRPGGDDQFENYSDSGGEEGENNK
RATTKLDDWISFKLDSEAAHLLLQLRFKWHSLFLRRMRAPAKPWSQVDEGVIRAVIGVLS
SEEQALGLQQPSGIGQRPRPMFNWDFSSSATESYGSQRGSRKNSTENQVPEPSFLALWKS
NESVPVGEENKGDRFYPRTSPANREKRILKRDYRSPREFDNRSDRSSVKSASANSSQASS
RTSSCTTSPCPSPNHTRGGERTPPSSASSRSGGRNTPPQRVRTPPFVSPKGGRTPQQSPN
VRSDKSSPGAGVSDPNRYFILKCNNQRNLDIAMNQSIWATTPSNEKKLNKAFKDCQNVYL
VFSVQGSGHFQGYARMASSISKDKVPEFSSASLGGAFQIEWIKRMSIPFQAAHHLLNPWN
ENKKVQISRDGQEIEPQVGEQLLKAWDRPVTILNRSPGSSRPSSRPSSGPPSKTSSPQGS
PKGQRSQEQRFAGSQKSKDSVTGKSNQLPVPPVHWQTEASAESAIEGSQTEPPSTAGEAA
NLVLAIPQTSTSSSSSSSPQEEASLPSPSQAVVEPAQQEPPAPAVVEPSEGMPGVGCDVP
PAGGEAAHPRGASPPLAVTPPPAFDPTLPMGSATPTMPDPSLPQD
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccgggggtcaggccgaccgcctccgagacccagatctcgaaactctcctcct
gtgggtcagcaggggatgggggagaggatgcaccagggaggagggaacagatctggtatg
tctcgtcctggaagcgcctctcctcagcctcagggtggggaaggtgggaagagagggggg
cgaccgccacctctgcacaagagagaaatctgcattgacgaggaggtaaagattgctgtc
aggattgctgtggagaagttcagatataacgagagtcagaaagagtatgaatttccatca
agtttgacgtcagtagagagagccttcatccacagatactgtcagagcctgggaatcaag
acaaagagtagaggaaagggcagcaaccgctacctgacaatcttcaagaaggacagccgg
acgatggggctgggtacagccaccttcagcctgtgccgcagtgccaggcaccacacgcac
accctcctacagaggttccctatcactggcagggagagacaagagctcatgcccaggact
gagagggggataggagaaggacacagtagagatgggaacagagcttcagggttgaacggt
cgcctgaacaacggtatccagcaggtgccccctccccggtcacagtcggagtacgacaac
tttcgcaggaccctgcctgtggctgtcctccaggaagtcattgtcaagactgtcaatgag
aaccaggtggtgctgattgctggggaaactgggtcagggaagactactcaggtcccccag
tttatcttagatgatgcccaacgtagcaatcggccatgtcggatcatctgcacccagcca
cgcagaatctctgccctgacagtggcagagagggtggcaagtgagaggggagagaagatt
ggacaaactgtgggctaccagatcagactggaaagcagggtgtctccgagaaccttgctg
acattctgtaccaatggtgtgttgctgagaactctgatgggaggggacagtgcactgact
accatcacacatgtcattgtggatgagatccatgagcgagacaggtttagtgacttcctg
ctgatcaagctgcgtgagatgctgggctacttcaagggcctgaaggttgtcctcatgagt
gcaaccctcaacactgaactgttccagcagtacttcggaagctgtccaatcatcaatgtt
tcaggaaacctgtttgatgtgacagaatttttcttggaagatgttttaagaagcaccaac
tactccaaccagaaaatgcagaagtacaagaaagagaggggacaattggaacaacagcag
tcctcattagaccagtggtaccaacagagcggcacccctgccccaggagtggttagtccc
aaagaacagctgacccagcacctggctgagaaggacttggacacagcacagcaggaggac
tatgaggtcagcgacctacaggacatcccccaggagagggatgtgagtgagatggaaccc
tggctgatacaggagatggataagtgcatcatgactgcctggctaaataacgatgccgat
gcctatgtgcagttgttccatctcatcatgagtgagaatgtcagcgttgactatcggcac
agcgagacctgctccaccaccctgatgattgccgctggtcgaggcaacatggcagcagtg
gaacagctgttagcactgggagccaacatcaacctcagagcacccaacggattgactgca
cttgactgggcaagaaagtttggccagacagatactgtggaggtgctagaagcttacata
gcatccagtgagatcacagtgagtgatgacaccctgctggtgagtgagagcagccagttg
agtacagaagacagggaactgctgaaggcataccaccagagctttgatgatgaacatgtg
gacctggacctcatcctgtgtcttctctttaacatctgtagcagccaggaggaaggagcc
atcctggtgttcttacctggctatgaggagatagtgaccctgcgagatgccatcatgtgg
gacgacaagaggttctccgataccagcaggtaccaggtgtacactctacactctgccatg
cagtcaggggaccagaaaagggttttccagcaggctcctgcaggagtcaggaaaattatc
ctgtcaaccaacattgctgaaaccagtgtgaccatcaatgatgtggtgtttgtaatagac
tcaggaaaagtgaaagagaaatcctttgatgctctgacatcagtgtctatgctgaaaagc
gtgtgggtgtctaaagccagtgcccagcagaggaagggcagggcagggcggtgtcggcca
ggtgtgtgtttccacctgttcagcagagtgaggtacgagagcctacaggagtaccaggac
cctgagctgctcaggactccgctacaggaactttgtctgcagaccaagctcctgtctgca
cccaacacccccattgcagagttccttgccaaggcgcctgaaccacctgctttcctggtg
ctgagaaatgctgttcagttgctgaagacggtagatgccctggacatgtgggaggacctg
acagagctggggcaccacatggtggacctgcccattgagcccagactggccaagatggtg
ctgtactctgtggtgctcaaatgtctggatcctgtcctcactatcgcctgtgctttggca
tacagggatccctttatcctgcccaaccagccatcccagaagcgtgcagctgtgtactgt
aggaagaagttctctgccggtgcttacagcgatcacatggccctcctgagagcatttcag
ggctggcagaaggccaagagtgatggctgggagcgcagcttctgtgagaagaacttcctc
tgccaggccaccatggagatgatcttcggcatgaggactcagctgttgggccagctgcgg
gcctctgggtttgtacgcgcacgaggagggggggacatcagggacctgaacaccaactct
gagaactgggcagtcattaaggctgccctgtgtgctgggagctatcccaacatggtcaga
gtggacagggaaaacctctggctgactacacagatggagaagagtgttcgtttccacaac
acatctgttctcggacaagcggcaaacccaaaggtcacagtagcgctgtcccatgcccag
agcgtcaccaagctgcctactgattggctagtgtatgaggagatctcaagagcacaccgc
tatgcctatgtgcgatgctgcacattgatgagtccagtgacagtcgccatatttgccggc
ccatctcgtctcccactggacgctctgacagaccccaacgcccctgacaacagacctggg
ggtgacgaccagtttgagaactacagtgacagtggaggggaggagggggagaacaacaag
cgcgccactaccaagttagacgactggatttcattcaaactagattcagaggcggcacac
ctgctgctacagctgcggtttaagtggcattctctcttcctgcgccgtatgagagcacct
gccaagccatggtcacaggtagacgagggtgttatccgagctgtgattggtgtgctgtcc
agcgaagagcaggccctgggtctccaacagccttctgggatagggcagaggccacgccca
atgtttaactgggatttttcctcttcagccacagagtcctatggatcccagcgaggcagc
agaaagaactctactgagaaccaagtacctgaaccctccttccttgccttgtggaagtct
aatgagtctgtgccagtgggagaggagaacaagggtgacaggttctacccacgaaccagt
ccggccaacagggagaagagaatcctgaagagggattacaggtctccacgagagtttgac
aaccgttcagatcgctcgtcggtgaagtctgcgtcagccaacagcagccaggcctccagt
cgcaccagtagctgtaccaccagcccctgcccctcccccaaccacaccaggggcggggag
aggaccccaccctcctctgcctccagtaggagtggggggagaaatacacccccacagcgg
gtcaggacacccccctttgtgagccccaagggtgggaggactccacaacagtctccaaat
gtcagaagtgacaagtcctcgccaggagctggtgtctcagatcccaaccgttacttcatc
ctgaagtgtaacaaccaacggaacctggacatcgccatgaaccagagtatctgggcaacc
acacccagcaatgagaagaaactcaacaaggcttttaaagattgccagaatgtctacctg
gtgttttcggttcaaggtagtgggcactttcaagggtatgctcgcatggcttcctctatc
agtaaggacaaggttccagagttcagctcagcttctcttggaggagccttccagatagag
tggattaaaagaatgagcatcccgttccaagctgcccaccacctcctgaacccatggaat
gagaacaagaaggtccagatcagccgggacggacaggagattgagccccaggtgggtgag
cagctgctgaaggcctgggatcgtccggtcaccatcctcaacaggagcccaggcagcagt
cgcccctcctcacgaccttcctctggacctccctccaaaacatcctccccgcagggctca
cctaaaggtcagaggtcacaggagcagaggtttgctggcagtcagaagtcgaaggacagt
gtaacagggaagagtaaccagctgccggttcccccggtacactggcagacagaagcttct
gcagagtctgccattgagggcagtcaaacagagcctccatccactgcaggagaagctgca
aacttagtgctagccataccgcagacttctacctccagctccagcagctccagccctcag
gaggaggccagcctgccctccccttcacaagcagtggtagaacctgcacaacaggagcct
ccagcccccgctgtagtggaaccatccgaggggatgccgggagtcgggtgtgacgttccc
cccgctgggggcgaggcagcccaccccaggggtgcttcacccccactagctgttacccca
ccacctgcttttgaccccaccttacccatgggaagcgccacacctaccatgcccgacccc
tcactcccacaggactaa
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integrated database retrieval system
